Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f08
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   2.2  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    24   5.2  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   5.2  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    23   6.9  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    23   9.1  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    23   9.1  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    23   9.1  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   9.1  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    23   9.1  

>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 49  PEYTANKILDAVVNKKNELILSQFLPRFAIFLRHTFPSLYFTIMAKRANE 198
           P   ANK L+A+ N  + +  ++++P+  +      PS Y ++   R  E
Sbjct: 41  PPQQANKQLNALNNLLDNVYWNKYIPKQVVLKPQFKPSYYESLTQIRRKE 90


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 172 TIMAKRANET*TLCHMNT 225
           +I+ ++AN T TLCH  T
Sbjct: 178 SILLEKANATVTLCHSKT 195


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 29  PQRKVSHRNIQRTKY*TRLLIKKMN 103
           P RK++H ++   K+ T  LIK+M+
Sbjct: 396 PFRKITHPSLHLGKFSTPKLIKRMS 420


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 165 VFYDYGKKSERNLNL 209
           V+YDY K+  RNL L
Sbjct: 339 VYYDYHKQGSRNLPL 353


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 136 IFLRHTFPSLYFTIMA 183
           +FL H  P+LYF I A
Sbjct: 635 VFLYHYLPALYFGIAA 650


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 134 ANLGRNWLSISSFFLLTTASNILFAVYSGVKPF 36
           AN+  + + I+ F LLT +++ + A    +KPF
Sbjct: 4   ANIVPSNMGITKFLLLTISTSSVVAGVFALKPF 36


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +1

Query: 16  VMDATTAKGFTP-EYTANKILDA---VVNKKNE 102
           V + +T +G T   Y ANKI+DA   VV K+N+
Sbjct: 360 VNNISTIRGGTHVNYVANKIVDAIDEVVKKENK 392


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 160 MEMCVSKIWQI*-VETGLVLVHFFY*QPRLIFCSLYIPV*NLSLWWH 23
           + +C+ ++W +  ++TGL +  FF       FC ++ P      W++
Sbjct: 258 LSVCL-ELWYLWDIKTGLTVERFFQHFLARFFCLIFFPFLFFLFWFY 303


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 67  KILDAVVNKKNELILSQFLPRFAIFLRHTFPSL 165
           K L  V+NK  +L+ S+ L ++  +LR+ FP++
Sbjct: 195 KRLIFVINKI-DLVPSEVLNKWVTYLRNFFPTI 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,163,698
Number of Sequences: 5004
Number of extensions: 20723
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)