Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f08
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0034 + 11751965-11752010,11752138-11752205,11753142-117532...    29   0.63 
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182...    28   1.4  
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109...    28   1.4  
04_04_1583 - 34599638-34600411,34600492-34600812                       27   2.5  
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495           27   3.3  
11_04_0181 + 14592392-14592421,14593627-14593633,14594222-145942...    26   4.4  
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137...    26   5.8  
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969...    25   7.7  
11_01_0145 + 1204021-1204296,1204430-1204492,1204667-1204795,120...    25   7.7  
07_03_0546 - 19325526-19326054,19327109-19327631,19327898-193281...    25   7.7  

>09_03_0034 +
           11751965-11752010,11752138-11752205,11753142-11753252,
           11753626-11753712,11753800-11754008,11754653-11754926,
           11756595-11757079,11758367-11758484,11758584-11758700,
           11758779-11758925,11759061-11759135,11759198-11759266,
           11759914-11760024,11760183-11760267,11760404-11760501,
           11760628-11760720,11760806-11760880
          Length = 755

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -2

Query: 221 FMWHKVQVSFALFAIIVKYNDGNVCLKNMANLG 123
           F W ++ +  + FA +++Y + ++CL+   N+G
Sbjct: 720 FEWDELDLKASQFAKLLQYQEQHICLQEAENMG 752


>07_03_1654 -
           28416487-28416548,28416791-28416824,28418156-28418212,
           28418401-28418450,28418968-28419025,28419136-28419182,
           28419278-28419377,28419446-28419586,28419715-28419780,
           28420024-28420118,28420440-28420629
          Length = 299

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 165 VFYDYGKKSERNLNLMPHEYSFAF*FKILLYFY*MKN 275
           +FY YG+  + +L + P    FAF  ++L+YF+ + N
Sbjct: 92  LFYKYGRIVDIDLKIPPRPPGFAF-VELLVYFWILLN 127


>07_01_0154 -
           1094256-1094672,1094954-1094977,1095867-1095891,
           1096014-1096304,1096391-1096470,1096953-1097052,
           1097143-1097204,1097650-1097750,1097940-1098117,
           1098298-1098924,1099014-1099100,1099804-1099905,
           1100265-1100348,1100580-1100657
          Length = 751

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 167 YNDGNVCLKNMANLGRNWLSISSFFLLTTASNILFAVYSGVKPFAVV 27
           ++DG  CL N+ ++   +    S ++  +A NIL  +   +  F VV
Sbjct: 74  FDDGFSCLANIISILVGFFGFCSSYVKHSAGNILIVISDSLMKFEVV 120


>04_04_1583 - 34599638-34600411,34600492-34600812
          Length = 364

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 149 CLKNMANLGRNWLSISSFFLLTTASNILFAV 57
           C+ + A LGR +L ISS+ LL   SNI  +V
Sbjct: 175 CIYDRAYLGR-YLEISSYALLGDGSNICISV 204


>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
          Length = 728

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 13  GVMDATTAKGFTPEYTA--NKILDAVVNKKNEL 105
           G  D   AKGF     A  + +LDA +N+KN +
Sbjct: 324 GSPDEEVAKGFVASANAGMSSVLDACINRKNSM 356


>11_04_0181 +
           14592392-14592421,14593627-14593633,14594222-14594265,
           14594351-14594419,14594461-14594517,14594824-14595204
          Length = 195

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 82  VVNKKNELILSQFLPRFAIFLRHT 153
           + N +NE I S+ LP+F IF   T
Sbjct: 45  IANNQNEFISSEELPKFIIFENKT 68


>06_01_0175 -
           1371089-1371706,1371812-1371994,1372069-1372324,
           1372407-1372976,1373423-1373529,1373664-1374136,
           1374279-1374372
          Length = 766

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 128 LGRNWLSISSFFLLTTASNILFAVYSGVKPFAVVASITP 12
           +G +W SISS+     AS     V  GV  F V+  ITP
Sbjct: 296 IGLDWSSISSYLGSPLASPWFATVNVGVGFFIVMYIITP 334


>11_03_0084 +
           9696368-9696554,9696648-9696718,9696821-9696901,
           9697139-9697206,9697335-9697437,9700422-9700567,
           9700686-9700803,9701693-9701797,9702333-9702434,
           9702518-9702655,9703475-9703603,9703682-9703762,
           9703883-9703957,9704861-9705028,9705125-9705242,
           9705345-9705409,9705547-9705637,9705801-9705885,
           9706006-9706084,9706317-9706414,9707029-9707137,
           9707224-9707292,9707770-9707835,9707952-9708041,
           9708416-9708526
          Length = 850

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 73  LDAVVNKKNELILSQ--FLPRFAIFLRHTFPSLYFTIMAKRAN 195
           L AV  K+ E +L +  F+ R + FLR+ FPSL   ++  + N
Sbjct: 371 LRAVREKRAEFVLLKCTFVRRASEFLRNYFPSLIDFMLNDKGN 413


>11_01_0145 +
           1204021-1204296,1204430-1204492,1204667-1204795,
           1205778-1205834,1205915-1206213,1206539-1206630,
           1206747-1206961,1207142-1207325,1207447-1207541,
           1208572-1208628,1209372-1209426,1209955-1210079
          Length = 548

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 19  MDATTAKGFTPEYTANKILDAVVNKKNELILSQFLPRF 132
           ++ATT      +  AN+IL+A++ +KN   ++  L  F
Sbjct: 469 IEATTGPRLIGDEKANQILEAILKRKNGPFINCMLRGF 506


>07_03_0546 -
           19325526-19326054,19327109-19327631,19327898-19328152,
           19328283-19328472,19328473-19328525,19329295-19329555,
           19329670-19329720,19329873-19330121,19330225-19330453,
           19332245-19332559
          Length = 884

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 182 AIIVKYNDGNVCLKNMANLGRNWLSISSFFLLTTASNILFA--VYSGVKPFAVVASITPX 9
           A++  +N   +      N  + W+S+    L  T S  +FA   Y  VK   VV S+   
Sbjct: 335 AVLQAFNPMYIYYYFERNPTQAWMSLGGCLLCATGSEAMFADLCYFSVKSVQVVLSVVLR 394

Query: 8   VS 3
           V+
Sbjct: 395 VN 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,011,797
Number of Sequences: 37544
Number of extensions: 113289
Number of successful extensions: 247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)