Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f08
         (291 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0)               30   0.37 
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.5  
SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)                     27   3.5  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.5  
SB_39441| Best HMM Match : SERTA (HMM E-Value=3.4)                     27   3.5  
SB_13877| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-07)                 27   3.5  
SB_39237| Best HMM Match : adh_short (HMM E-Value=1.6e-11)             26   4.6  
SB_6262| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.6  
SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)                      26   6.1  
SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)                       25   8.0  
SB_8517| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.0  
SB_26936| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.0  

>SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0)
          Length = 890

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -2

Query: 248 YFKSKGKTVFMWHKVQVSFALFAIIVK--YNDGNVCLKNMANLGRNWLSISSFFLLTTAS 75
           Y+KS     F W  V  +  ++   +    + G +  K      + W+ ++   + T  S
Sbjct: 412 YYKSDMTDSFNWRCVMATILVYVACLAPAISFGGLLYKKT----KGWMGVAEMIVSTALS 467

Query: 74  NILFAVYSGVKPFAVVASITP 12
            ++FA+++G +P  ++ +  P
Sbjct: 468 GVIFALFAG-QPLIIIGATGP 487


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = -2

Query: 278  FIFHLIKVQ*YFKSKGKTVFMWHKVQVSFALFAIIVKYNDGNVCLKNMANLGRNWLSISS 99
            F+ H I V   F+          ++     LF  I+    GN+ L+N+ N     LSIS 
Sbjct: 1496 FVDHHIWVSVLFRPAKSNFTRVQRLSCCLLLFLAIIL---GNIILRNVFNYRTVILSISD 1552

Query: 98   FFLLTTASNILFAVYSGVKPFAVV 27
            + L T    +   V S V P +V+
Sbjct: 1553 YSLSTADIYVGAVVGSLVMPISVL 1576


>SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 791

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 191 ALFAIIVKYNDGNVCLKNMAN 129
           A F +I+ YND  +C K +AN
Sbjct: 44  ARFLVIIHYNDAFMCSKRIAN 64


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -2

Query: 230  KTVFMWHKVQVS-FALFAIIVKYNDGNVCLKNM-ANLGRNWLSISSFFLLTTASNILFAV 57
            K  F W  + V+ F  FA+       NV    + A     WL +S     +    +LFA+
Sbjct: 1290 KDGFNWQCLLVTVFLYFAVFAP----NVAFGGLLAEKTDQWLGVSEVIFASCFCGLLFAL 1345

Query: 56   YSGVKPFAVVASITP 12
            +SG +P  ++ +  P
Sbjct: 1346 FSG-QPLIIIGATGP 1359


>SB_39441| Best HMM Match : SERTA (HMM E-Value=3.4)
          Length = 463

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -2

Query: 182 AIIVKYNDGNVCLKNMANLGRNWLSISSFFLLTTASNILFAV 57
           A+++ Y+D N   ++  +LG +  ++S      +AS++LF++
Sbjct: 292 ALLLCYDDNNFTCESKTDLGVHVKNVSDRMYTDSASDLLFSI 333


>SB_13877| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-07)
          Length = 230

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 131 NLGRNWLSISSFFLLTTASNILFAVYSGVKPFAVVASI 18
           +L   WLS ++FFL  TAS +  AV +  +  A+   I
Sbjct: 68  SLPMRWLSQTAFFLCCTASLLSLAVLTSDRYLAIAYPI 105


>SB_39237| Best HMM Match : adh_short (HMM E-Value=1.6e-11)
          Length = 305

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 49  PEYTANKILDAVVNKKNELILSQFLPRFAI 138
           P++   +I+DAV+  K  LIL + L  F +
Sbjct: 273 PDWVVKEIVDAVLRNKEVLILPKILSFFLV 302


>SB_6262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 7   TXGVMDATTAKGFTPEYTANKILDAVVNKKNELILSQFLPRF 132
           T  ++     KGF  E   N+    V+   + L LSQ  P+F
Sbjct: 329 TTAIVKGQDQKGFFMEQHVNRPTHRVLRAPSNLFLSQIRPKF 370


>SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)
          Length = 1582

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 90   INNRV*YFVRCIFRCETFRCGGIHNTXSV 4
            ++  V   VRCI+  ETF   G+H++ S+
Sbjct: 990  VDETVLSMVRCIYFVETFVKDGVHHSPSM 1018


>SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 416

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 272 FHLIKVQ*YFKSKGKTVFMWHKVQVSFALFAIIVKY 165
           FH    + Y   K + +F  HK  V + LF  +V+Y
Sbjct: 169 FHDAGNESYCYEKWEPLFDTHKASVHYTLFLFVVQY 204


>SB_8517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 28  TTAKGFTPEYTANKILDAVVN-KKNELIL 111
           TT+K  TP+ TAN+I    V  +K ELI+
Sbjct: 69  TTSKRGTPDTTANQITAMFVKIRKQELII 97


>SB_26936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 66 VRCIFRCETFRCGGIHNTXSV 4
          VRCI+  ETF   G+H++ S+
Sbjct: 2  VRCIYFVETFVKDGVHHSPSM 22


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,306,013
Number of Sequences: 59808
Number of extensions: 138574
Number of successful extensions: 280
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 328507322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)