Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f07
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   2.1  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   2.1  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   2.1  

>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 267 LVKNSQSSTSSAVPLVTSMFRC 202
           LV     +TS AVPL+ + F C
Sbjct: 259 LVAEKIPTTSDAVPLIGTYFNC 280


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 267 LVKNSQSSTSSAVPLVTSMFRC 202
           LV     +TS AVPL+ + F C
Sbjct: 259 LVAEKIPTTSDAVPLIGTYFNC 280


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 302 LKKIVNSINQMRVEAAYLQSDLLTTIEANTWQDIASLVG-LTSIEVNPQEVNLKY*LGS 475
           LKKI N  N    + A L    L T  ANT +    +   +    V+P    LK+ + S
Sbjct: 55  LKKIYNIQNNFEYDTASLPLPGLYTKSANTIRSFTHVESPIDEKFVHPHRFRLKFNISS 113


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = -3

Query: 411 RLAMSCQVFASIVVRRSDCKYAASTLIWLMLLTIFFKSEIPFSIFSVMLVKNSQSSTSSA 232
           +L +S       V+  + C Y  S  IW +L  + F      +I   +L   + S T   
Sbjct: 25  KLTLSPLKVLQTVILGTTCIYLTSLYIWFILTQMTFSGVTSPTIMKFVLSFRTGSFTFLM 84

Query: 231 VPLVTS 214
           V  V S
Sbjct: 85  VVAVLS 90


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = -3

Query: 411 RLAMSCQVFASIVVRRSDCKYAASTLIWLMLLTIFFKSEIPFSIFSVMLVKNSQSSTSSA 232
           +L +S       V+  + C Y  S  IW +L  + F      +I   +L   + S T   
Sbjct: 25  KLTLSPLKVLQTVILGTTCIYLTSLYIWFILTQMTFSGVTSPTIMKFVLSFRTGSFTFLM 84

Query: 231 VPLVTS 214
           V  V S
Sbjct: 85  VVAVLS 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,642
Number of Sequences: 336
Number of extensions: 2366
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)