Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f07
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    28   1.3  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   3.9  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   6.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.0  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = +3

Query: 453 TSNIDSEVIMNVIPKN*CNSIPVRPVGGSISL*RENLKIFFKRKSESLWIQLKM*FVN 626
           +SN+D E +   + K  C+S  + P+GG IS  + +LK F +   E+L + +   F++
Sbjct: 517 SSNVD-ECLRGYLTKYDCSSADINPIGG-IS--KTDLKSFLRYAKEALDLPILQEFLD 570


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 541 SLSNVRI*RFFLRESPKVFGYN*KCNLL 624
           SL NV + +  LRE PK+ G N + +LL
Sbjct: 467 SLPNVGVGKLELREDPKLLGTNRESSLL 494


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 575 KKNLQILTLERDRASYWPHGNRIALVFWNDIHND 474
           K+N ++    +D    WP   R+  V W DI+N+
Sbjct: 211 KENERMFHECKDDTYTWPSSYRLGEVVWIDINNE 244


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +2

Query: 263 TNITEKIEKGISDLKKIVNSINQMRV 340
           +NI EKI+  ++  KK+  +I+Q+++
Sbjct: 761 SNILEKIKLPVATSKKLTRTISQLKI 786


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 399 SCQVFASIVVRRSDCKYAAS 340
           SC+ +  I++  S CKYAA+
Sbjct: 224 SCKFYGGILIGVSHCKYAAA 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,005
Number of Sequences: 5004
Number of extensions: 38503
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)