Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f07
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0401 + 3043634-3043894,3045610-3045849                           29   3.0  
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    28   5.3  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    27   9.3  

>01_01_0401 + 3043634-3043894,3045610-3045849
          Length = 166

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +2

Query: 350 YLQSDLLTTIEANTWQDIASLVGLTSIEVNPQEVNLKY*LGSHYECHSKKLMQFDSREAS 529
           +  SD+  + EA T Q      GL   E N + + +   L +HY CH   L Q + RE  
Sbjct: 81  FCSSDVEGSFEAFTKQ-CGCCHGLVEDEGNREHLEVACDLATHYFCHPCALCQ-EGRELR 138

Query: 530 RRL 538
           RR+
Sbjct: 139 RRV 141


>04_04_0859 +
           28805836-28805842,28806405-28806492,28807474-28807558,
           28807638-28807763,28807819-28807968,28808497-28808541,
           28808612-28808875,28809843-28809887,28810395-28810430,
           28812048-28812816,28813063-28813925,28814024-28814182,
           28814440-28814558,28815356-28815417,28816677-28816805,
           28817395-28817460,28817757-28817890,28818025-28818162,
           28818630-28818889,28818996-28819107,28819590-28819675,
           28820655-28820735,28822841-28822928,28823222-28823260,
           28823847-28823964,28824063-28824130,28824884-28824981,
           28825238-28825397,28825691-28825816,28825876-28825945,
           28826046-28826449
          Length = 1664

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 200 KQRNMEVTNGTAEEVEDCEFFTNITEKIEKGISDLKKIVNSIN 328
           K RN E+T+GT+E V   + +  +      G++ L+ ++++I+
Sbjct: 684 KSRNCEITDGTSECVGGQDMYAVVRNSFLDGLNPLECLLHAIS 726


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 602  YPKTFGLSLKKNLQILTLERDRASYWPHGN 513
            Y K+  L     ++ +T E+  ASYWPH N
Sbjct: 1170 YSKSRALQAFIEMKEVTYEKFSASYWPHFN 1199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,105,022
Number of Sequences: 37544
Number of extensions: 193016
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)