Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f07
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_53075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_33834| Best HMM Match : PAN (HMM E-Value=0.00029)                   27   9.5  

>SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 590 FGLSLKKNLQILTLERDRASYWP---HGNRIALVFW 492
           FGLS   NL  + LER RA+ WP   H +R  + F+
Sbjct: 69  FGLSSVVNLTFIALERMRATVWPIRHHSSRPQMYFY 104


>SB_53075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 277 FCYVGEKFTVFHFLCCSVSDF 215
           FC  GE+FTV H L C    F
Sbjct: 176 FCACGERFTVSHALSCKKGGF 196


>SB_33834| Best HMM Match : PAN (HMM E-Value=0.00029)
          Length = 198

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = -3

Query: 432 SIEVNPTRLAMSCQVFASIVVRRSDCKYAASTLIWLMLLTIFFKSEIPFSIFSVMLVKNS 253
           S EVNPT+L ++  V + +  RRS            +++    K  I + I S +L + S
Sbjct: 111 SAEVNPTQLKLNTAVLSPVYFRRSVGNLNRQKTKESLIIRA-IKRAIRYKIISQILKETS 169

Query: 252 QSSTSSAVPLVTSMF 208
           + +T+  +    S F
Sbjct: 170 KRNTALKILKYFSQF 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,604,727
Number of Sequences: 59808
Number of extensions: 236523
Number of successful extensions: 517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)