Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f07
         (629 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   2.6  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   6.1  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    23   6.1  
EF382662-1|ABN54495.1|  178|Anopheles gambiae CPF family cuticle...    23   8.0  

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 318 LTIFFKSEIPFSIFSVMLVKNSQSSTSSAVPLVTSMFRC 202
           LT+     +  ++FS +LV +  + TS AVPL+ + F C
Sbjct: 263 LTLGLTILVSQTVFS-LLVGHVITKTSEAVPLLGTYFNC 300


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 267 LVKNSQSSTSSAVPLVTSMFRC 202
           +V  +  +TS AVPL+ + F C
Sbjct: 262 MVAETMPATSDAVPLLGTYFNC 283


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 267 LVKNSQSSTSSAVPLVTSMFRC 202
           +V  +  +TS AVPL+ + F C
Sbjct: 294 MVAETMPATSDAVPLLGTYFNC 315


>EF382662-1|ABN54495.1|  178|Anopheles gambiae CPF family cuticle
           protein protein.
          Length = 178

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 468 SQYLRLTSCGLTSIEVNPTRLAMSCQVFASIVVRRSDCKYAA 343
           SQY +      +S+ V+ +RL+     +A+  V+ +   YAA
Sbjct: 53  SQYSKAVDSAHSSVRVHSSRLSNDGYAYAAPAVKYAAPAYAA 94


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,940
Number of Sequences: 2352
Number of extensions: 10178
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)