Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f07
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93389-4|CAE17923.1|  324|Caenorhabditis elegans Hypothetical pr...    31   0.90 
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical ...    30   1.2  
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    29   2.1  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    27   8.4  

>Z93389-4|CAE17923.1|  324|Caenorhabditis elegans Hypothetical
           protein T13F3.7 protein.
          Length = 324

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +2

Query: 314 VNSINQMRVEAAY-LQSDLLTTIEANTWQDIASLVG----LTSIEVNPQEVNLKY*LGSH 478
           VN I  + V  AY + S  LTTI A+ WQD++   G    L  I   P  V LK    +H
Sbjct: 193 VNVIASLIVACAYFVLSFFLTTISASRWQDVSFTDGIKITLNLIATVPPSVQLKLITDAH 252


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical
           protein F37A4.4 protein.
          Length = 1163

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = +2

Query: 254 EFFTNITEKIEKGISDLKKIVNSINQMRVEAAYLQSDLLTTIEANTWQDIASLVGLTSI 430
           EF+TN    IEK +SDL+K+  S        +Y ++DLLT      ++D + +VG+  +
Sbjct: 641 EFWTNPGPSIEKLVSDLEKLEQS------SKSYRKADLLTI--RKVFEDGSKIVGIPEV 691


>AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical
           protein C41H7.5 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 581 SLKKNLQILTLERDRASYWPHGNRIALVFWNDIHND 474
           SLKK   +L+L +DR   W +GNR  L  W ++  D
Sbjct: 48  SLKK--VVLSLIKDRPGMWQNGNRFQLENWRELGVD 81


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -3

Query: 417 PTRLAMSCQVFASIVV-RRSDCKYAASTLIWLMLLTIFFKSEIPFSIFSV 271
           P  ++++   FAS+++   S CKY+ ST +W+ L  +  +  + FS +++
Sbjct: 122 PMIISVNIYAFASVIIFLLSGCKYSWSTEMWMFLYHVSNQC-VSFSFYAI 170


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
            protein C28H8.3 protein.
          Length = 1714

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 215  EVTNGTAEEVEDCEFF-TNITEKIEKGISDLKKIVNSINQMRVEAAYLQSD 364
            EV + T +E E C+FF  + T+ +    S+L+++ N++ +  +E  +L SD
Sbjct: 1047 EVDDATKKEFEPCKFFGQHGTKAVWISRSELRRLENALKERFME--WLSSD 1095


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,665,020
Number of Sequences: 27780
Number of extensions: 207277
Number of successful extensions: 610
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)