Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8f06
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 245 3e-66
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 136 2e-33
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 132 4e-32
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 131 8e-32
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 28 0.81
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.5
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 3.3
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 4.3
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 4.3
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 5.7
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 25 5.7
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 7.5
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 10.0
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 25 10.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 10.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 245 bits (600), Expect = 3e-66
Identities = 106/138 (76%), Positives = 122/138 (88%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV 324
MREIVHIQAGQCGNQ+GA FW I+DEHG+D+ G Y G S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 325 PRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 504
PRAV+VDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 505 RKEAEGCDCLQGFQLTHS 558
R+EAE CD LQGFQLTHS
Sbjct: 121 RREAEACDALQGFQLTHS 138
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 136 bits (330), Expect = 2e-33
Identities = 63/140 (45%), Positives = 87/140 (62%), Gaps = 2/140 (1%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLER--INVYYNEASGGK 318
MREI+ I GQ G QIG WE+ EHGI G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 319 YVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 498
YVPR++ VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 499 VVRKEAEGCDCLQGFQLTHS 558
+R+ A+ C LQGF + HS
Sbjct: 121 KIRRIADNCSGLQGFLVFHS 140
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 132 bits (318), Expect = 4e-32
Identities = 60/144 (41%), Positives = 89/144 (61%), Gaps = 6/144 (4%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLER------INVYYNEA 306
MRE++ + GQ G QIG WE+ EHGI G + +S++ +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 307 SGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 486
GK+VPR++ VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 487 SVLDVVRKEAEGCDCLQGFQLTHS 558
SVL+ +R+ A+ C LQGF + HS
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHS 144
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 131 bits (316), Expect = 8e-32
Identities = 54/139 (38%), Positives = 94/139 (67%), Gaps = 2/139 (1%)
Frame = +1
Query: 148 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYVP 327
REI+ +QAGQCGNQIG++FW+ + EHGI G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 328 RAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 501
RA+++DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 502 VRKEAEGCDCLQGFQLTHS 558
+ +EA+G D L+GF L HS
Sbjct: 122 IDREADGSDSLEGFSLLHS 140
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 28.3 bits (60), Expect = 0.81
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 437 PAPDCPKTKLSGRKICPNGPERTESMVPGSRS 342
P+ PK L R I PNGPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 379 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 480
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -2
Query: 213 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 109
+F E+ + P +LD+DD + + P E+N
Sbjct: 36 FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 4.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 110 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 268
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 448 AKGHYTEGAELVDSVLDVVRKEAEGCDCLQ 537
A+GH G ELV + D +RK++E L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 4.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 110 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 268
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 5.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 170 AWMWTISLMIALKIWNPPNRI 108
AW+W ++LM+ + PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 487 NQPVQPPLCNVLSPSYSPPQT 425
N+P +PP+ N + PPQT
Sbjct: 86 NEPAKPPIPNAATKPTFPPQT 106
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.0 bits (52), Expect = 7.5
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Frame = +1
Query: 187 QIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV-----PRAVMVDLE 351
QIG ++D IDA A G SD QL+ I+ + E + PR++++ E
Sbjct: 742 QIGCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLETATILRAATPRSLIIIDE 801
Query: 352 PGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 501
G S G FG + + Q G +A HY E +L + + V
Sbjct: 802 LGRGTSTTDG-FGLAWAITEHIVTQIGCFCLFAT-HYHEMTKLSEEITTV 849
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 124 FQIFSAIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSD 267
F + S I I C + +W+V+ G+ TGA S SD
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD 854
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 23 CDATLVGKSLHFYINFFLHDQILESV 100
C +VG SL + FF D I +S+
Sbjct: 69 CSTVIVGNSLKAAVRFFAFDSIKKSL 94
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -2
Query: 534 QTIAAFCFFSNYIQYRINQFSPLCVMSFRPVIPRPRLSEDEVVRSEDLPKRPGTDG 367
Q AA+ +S++ + FSP + P + P ++ V LP+ P + G
Sbjct: 109 QNSAAYTTYSSFPNALFDDFSPNNPLDTDPFLTSPGNKQNTVDSFRPLPETPVSPG 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,640
Number of Sequences: 5004
Number of extensions: 49031
Number of successful extensions: 162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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