Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8f06
(559 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 289 1e-78
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 288 2e-78
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 283 9e-77
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.) 190 7e-49
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 177 5e-45
SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27) 144 4e-35
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 136 1e-32
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 135 2e-32
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 134 3e-32
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 133 8e-32
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 133 1e-31
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 132 2e-31
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 4e-31
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 104 4e-23
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 2e-22
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 4e-22
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 75 5e-14
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 72 4e-13
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 69 3e-12
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 6e-12
SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44) 66 2e-11
SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 53 2e-07
SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18) 46 2e-05
SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 41 6e-04
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 36 0.030
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083) 30 1.5
SB_50693| Best HMM Match : C2 (HMM E-Value=0) 29 1.9
SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17) 29 2.6
SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4) 29 3.4
SB_28090| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 7.9
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 289 bits (708), Expect = 1e-78
Identities = 131/138 (94%), Positives = 133/138 (96%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV 324
MREIVH QAGQCGNQIGAKFWEVISDEHGID TG Y GDSDLQLERINVYYNEA+GGKYV
Sbjct: 214 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 273
Query: 325 PRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 504
PRAV+VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 274 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 333
Query: 505 RKEAEGCDCLQGFQLTHS 558
RKEAE CDCLQGFQLTHS
Sbjct: 334 RKEAESCDCLQGFQLTHS 351
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 288 bits (707), Expect = 2e-78
Identities = 130/138 (94%), Positives = 133/138 (96%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV 324
MREIVH QAGQCGNQIGAKFWEVISDEHGID TG Y GDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 325 PRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 504
PRA++VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 505 RKEAEGCDCLQGFQLTHS 558
RKEAE CDCLQGFQLTHS
Sbjct: 121 RKEAESCDCLQGFQLTHS 138
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 283 bits (693), Expect = 9e-77
Identities = 126/138 (91%), Positives = 133/138 (96%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV 324
MREIV +QAGQCGNQIGAKFWEVISDEHGID TG Y GDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVSLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 325 PRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 504
PR+V++DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRSVLIDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELMDSVLDVV 120
Query: 505 RKEAEGCDCLQGFQLTHS 558
RKEAE CDC+QGFQLTHS
Sbjct: 121 RKEAESCDCIQGFQLTHS 138
>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 190 bits (463), Expect = 7e-49
Identities = 85/92 (92%), Positives = 88/92 (95%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV 324
MREIVH QAGQCGNQIGAKFWEVISDEHGID TG Y GDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 325 PRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 420
PRA++VDLEPGTMDSVRSGPFGQIFRPDNFVF
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVF 92
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 177 bits (431), Expect = 5e-45
Identities = 79/82 (96%), Positives = 81/82 (98%)
Frame = +1
Query: 313 GKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 492
GKYVPRAV+VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV
Sbjct: 2 GKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 61
Query: 493 LDVVRKEAEGCDCLQGFQLTHS 558
LDVVRKEAE CDC+QGFQLTHS
Sbjct: 62 LDVVRKEAESCDCIQGFQLTHS 83
>SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)
Length = 144
Score = 144 bits (349), Expect = 4e-35
Identities = 59/81 (72%), Positives = 72/81 (88%)
Frame = +1
Query: 307 SGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 486
+GG+YVPR+++VDLEPGTMD+VR GP G +FRPDNFV QSGA NNWAKGHY+EGAEL+D
Sbjct: 11 TGGRYVPRSILVDLEPGTMDAVRGGPLGNMFRPDNFVNSQSGAANNWAKGHYSEGAELID 70
Query: 487 SVLDVVRKEAEGCDCLQGFQL 549
++ DV+RKEAE CDC+QG QL
Sbjct: 71 NIFDVLRKEAENCDCMQGVQL 91
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 136 bits (329), Expect = 1e-32
Identities = 66/140 (47%), Positives = 86/140 (61%), Gaps = 2/140 (1%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGK 318
MRE + I GQ G QIG WE+ EHGI G D + + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 319 YVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 498
+VPRAV VDLEP +D VR+G + Q+F P+ V G+ A NN+A+GHYT G E+VD VLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLVTGKEDAANNYARGHYTVGKEIVDLVLD 120
Query: 499 VVRKEAEGCDCLQGFQLTHS 558
+RK A+ C LQGF + HS
Sbjct: 121 RIRKLADQCTGLQGFLIFHS 140
Score = 134 bits (323), Expect = 6e-32
Identities = 64/139 (46%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
Frame = +1
Query: 148 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGKY 321
RE + I GQ G QIG WE+ EHGI G D + + N +++E GK+
Sbjct: 435 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 494
Query: 322 VPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 501
VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 495 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDLVLDR 554
Query: 502 VRKEAEGCDCLQGFQLTHS 558
+RK A+ C LQGF + HS
Sbjct: 555 IRKLADQCTGLQGFLIFHS 573
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 135 bits (327), Expect = 2e-32
Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 2/140 (1%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGK 318
MRE + + GQ G Q+G WE+ EHGI G D + + N +++E GK
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGSGK 60
Query: 319 YVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 498
+VPRAV DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D+VLD
Sbjct: 61 HVPRAVFCDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEMIDTVLD 120
Query: 499 VVRKEAEGCDCLQGFQLTHS 558
+RK A+GC LQGF + HS
Sbjct: 121 RLRKLADGCTGLQGFLIFHS 140
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 134 bits (325), Expect = 3e-32
Identities = 64/140 (45%), Positives = 86/140 (61%), Gaps = 2/140 (1%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGK 318
+RE + I GQ G QIG WE+ EHGI G D + + N +++E GK
Sbjct: 586 VRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 645
Query: 319 YVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 498
+VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD
Sbjct: 646 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLD 705
Query: 499 VVRKEAEGCDCLQGFQLTHS 558
+RK A+ C LQGF + HS
Sbjct: 706 RIRKLADQCTGLQGFLIFHS 725
Score = 134 bits (323), Expect = 6e-32
Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 2/141 (1%)
Frame = +1
Query: 142 IMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGG 315
+ RE + + GQ G QIG WE+ EHGI G D + + N +++E G
Sbjct: 64 LQRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAG 123
Query: 316 KYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 495
K+VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VL
Sbjct: 124 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 183
Query: 496 DVVRKEAEGCDCLQGFQLTHS 558
D +RK A+ C LQGF + HS
Sbjct: 184 DRIRKLADQCTGLQGFLIFHS 204
Score = 62.5 bits (145), Expect = 2e-10
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +1
Query: 148 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGKY 321
RE + I GQ G QIG WE+ EHGI G D + + N +++E GK+
Sbjct: 514 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 573
Query: 322 VPRAVMVDLEPGTMDSV 372
VPRAV VDLEP + +
Sbjct: 574 VPRAVFVDLEPTVRECI 590
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 133 bits (322), Expect = 8e-32
Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
Frame = +1
Query: 148 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGKY 321
RE + I GQ G QIG WE+ EHGI G D + + N +++E GK+
Sbjct: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
Query: 322 VPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 501
VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDR 120
Query: 502 VRKEAEGCDCLQGFQLTHS 558
+RK A+ C LQGF + HS
Sbjct: 121 IRKLADQCTGLQGFLIFHS 139
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 133 bits (321), Expect = 1e-31
Identities = 64/139 (46%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Frame = +1
Query: 148 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGKY 321
RE + I GQ G QIG WE+ EHGI G D + + N ++ E GK+
Sbjct: 373 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFAETGAGKH 432
Query: 322 VPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 501
VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E +D VLD
Sbjct: 433 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEQIDIVLDR 492
Query: 502 VRKEAEGCDCLQGFQLTHS 558
+RK A+GC LQGF + HS
Sbjct: 493 LRKLADGCTGLQGFLIFHS 511
Score = 130 bits (314), Expect = 8e-31
Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Frame = +1
Query: 148 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGKY 321
RE + + GQ G Q+G WE+ EHGI G D + + N +++E GK+
Sbjct: 806 RECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 865
Query: 322 VPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 501
VPRAV DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 866 VPRAVFADLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEMIDLVLDR 925
Query: 502 VRKEAEGCDCLQGFQLTHS 558
+RK A+ C LQGF + HS
Sbjct: 926 IRKLADQCTGLQGFLIFHS 944
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 132 bits (319), Expect = 2e-31
Identities = 63/140 (45%), Positives = 85/140 (60%), Gaps = 2/140 (1%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGK 318
MRE + I GQ G Q+G WE+ EHGI G D + + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 319 YVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 498
+VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 499 VVRKEAEGCDCLQGFQLTHS 558
RK A+ C LQGF + HS
Sbjct: 121 RCRKLADQCTGLQGFLIFHS 140
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 131 bits (316), Expect = 4e-31
Identities = 61/139 (43%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
Frame = +1
Query: 148 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGKY 321
RE V I GQ G Q+G WE+ EHGI G D + + N +++E GK+
Sbjct: 420 RECVSIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 479
Query: 322 VPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 501
VPRAV VDLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G + +D+VLD
Sbjct: 480 VPRAVFVDLEPSVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKDHIDNVLDR 539
Query: 502 VRKEAEGCDCLQGFQLTHS 558
+RK A+ C LQGF + HS
Sbjct: 540 IRKLADQCSGLQGFLVFHS 558
Score = 113 bits (273), Expect = 7e-26
Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Frame = +1
Query: 190 IGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGKYVPRAVMVDLEPGTM 363
+G WE+ EHGI G D + + N +++E GK+VPRAV DLEP +
Sbjct: 1 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFCDLEPTVV 60
Query: 364 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGF 543
D VR+G + Q+F P+ + G+ A NN+A+GHYT G +L++ VLD +RK A+ C LQGF
Sbjct: 61 DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKQLIEIVLDRLRKLADQCTGLQGF 120
Query: 544 QLTHS 558
+ HS
Sbjct: 121 LIFHS 125
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 104 bits (250), Expect = 4e-23
Identities = 58/140 (41%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGK 318
MRE + I GQ G QIG WE+ EHGI G D + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTQGGGDDSFNTFFSETGAGK 60
Query: 319 YVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 498
+VPRAV VDLEP + P+ + G+ A NN+A+GHYT G + VD VLD
Sbjct: 61 HVPRAVFVDLEPTVV----------ALSPEQLITGKEDAANNYARGHYTIGKQQVDQVLD 110
Query: 499 VVRKEAEGCDCLQGFQLTHS 558
+RK A+ C LQGF + HS
Sbjct: 111 RLRKLADQCSGLQGFFIFHS 130
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 102 bits (245), Expect = 2e-22
Identities = 44/94 (46%), Positives = 62/94 (65%)
Frame = +1
Query: 277 ERINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKG 456
+ N ++ E GK+VPRAV VDLEP +D +R+G + Q+F P+ + G+ A NN+A+G
Sbjct: 12 DSFNTFFAETGAGKHVPRAVFVDLEPTVIDEIRTGTYRQLFHPEQLLSGKEDAANNYARG 71
Query: 457 HYTEGAELVDSVLDVVRKEAEGCDCLQGFQLTHS 558
HYT G E +D LD +RK A+ C LQGF + HS
Sbjct: 72 HYTVGKEHIDLALDRIRKLADQCTGLQGFLIFHS 105
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 101 bits (242), Expect = 4e-22
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +1
Query: 298 NEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 477
+EA+ GKYVPRAV+VDLEP +D VR+G + ++ P+ + G+ A NN+A+GHYT G E
Sbjct: 965 SEAAAGKYVPRAVLVDLEPTVIDEVRTGMYRYLYHPEQMISGKEDAANNYARGHYTIGKE 1024
Query: 478 LVDSVLDVVRKEAEGCDCLQGFQLTHS 558
+V+ V+D +RK + C LQGF + HS
Sbjct: 1025 MVEVVMDKIRKMTDQCSGLQGFLIFHS 1051
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +1
Query: 364 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGF 543
D VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD +RK A+ C LQGF
Sbjct: 13 DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGF 72
Query: 544 QLTHS 558
+ HS
Sbjct: 73 LIFHS 77
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 74.5 bits (175), Expect = 5e-14
Identities = 32/63 (50%), Positives = 44/63 (69%)
Frame = +1
Query: 370 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQL 549
VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD +RK A+ C LQGF +
Sbjct: 3 VRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGFLI 62
Query: 550 THS 558
HS
Sbjct: 63 FHS 65
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 71.7 bits (168), Expect = 4e-13
Identities = 30/45 (66%), Positives = 36/45 (80%)
Frame = +1
Query: 424 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQLTHS 558
Q+ A NNWAKG YTEGAEL+DS +D +RK AE CD +QGFQ+ HS
Sbjct: 2 QNSAANNWAKGFYTEGAELMDSGMDCIRKLAENCDTVQGFQIAHS 46
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 68.9 bits (161), Expect = 3e-12
Identities = 29/63 (46%), Positives = 42/63 (66%)
Frame = +1
Query: 370 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQL 549
+R+G + Q+F P+ + G+ A NN+A+GHYT G E +D LD +RK A+ C LQGF +
Sbjct: 3 IRTGTYRQLFHPEQLLSGKEDAANNYARGHYTVGKEHIDLALDRIRKLADQCTGLQGFLI 62
Query: 550 THS 558
HS
Sbjct: 63 FHS 65
>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 67.7 bits (158), Expect = 6e-12
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL--ERINVYYNEASGGK 318
MRE + + GQ G QIG WE+ EHGI G D + + N +++E GGK
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIDGGDDSFNTFFSETGGGK 60
Query: 319 YVPRAVMVDLEPGTMDSVR 375
+VPRAV VDLEP + ++
Sbjct: 61 HVPRAVFVDLEPSVVGRMK 79
>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
Length = 474
Score = 65.7 bits (153), Expect = 2e-11
Identities = 51/143 (35%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Frame = +1
Query: 154 IVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE-RINVYYNEASGGKYVPR 330
IV +Q GQCGNQIG + +++I + DAT S +L R Y E S ++ R
Sbjct: 3 IVTLQLGQCGNQIGRELFDLIVE----DATKLNSRFLCKELTTRSCTEYEEESLARFFTR 58
Query: 331 ---------AVMVDLEPGTMDSVRS--GPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGA 474
AV +D+E + S G P F Q G+GNNWA G G
Sbjct: 59 ENDDILNARAVSIDMESKVISQTLSEASKSGTWRYPKGQQFSQKRGSGNNWAHGFSEHGP 118
Query: 475 ELVDSVLDVVRKEAEGCDCLQGF 543
+ +D VLD+V++E E CD L GF
Sbjct: 119 KSIDKVLDLVQREVEKCDRLDGF 141
>SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +1
Query: 370 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 510
VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD +RK
Sbjct: 3 VRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRK 49
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +1
Query: 370 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 510
VR G + +F PD + G+ A NN+A+GHYT G E +D L+ +RK
Sbjct: 3 VRMGTYRDLFHPDQLITGKEDAANNYARGHYTVGKEHIDLTLEKIRK 49
>SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)
Length = 553
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Frame = +1
Query: 328 RAVMVDLEPGTMDSVR--SGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE-----GAELVD 486
R V VD E + S R G GQ R N + G+ G GNN+A G++ G L+
Sbjct: 40 RCVCVDSESKVIASNRRSDGVHGQN-RDSNIIAGRRGRGNNFALGYHGNSIDEGGTSLLH 98
Query: 487 SVLDVVRKEAEGCDCLQGFQLTHS 558
+D +RKE E CD G + HS
Sbjct: 99 MTMDAMRKEVERCDSFAGTIVMHS 122
>SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/35 (51%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +1
Query: 202 FWEVISDEHGIDATGAYSG-DSDLQLERINVYYNE 303
FWEVI++EHGID G + S +Q +R+NVY++E
Sbjct: 1 FWEVIAEEHGIDPDGQCTAVQSKIQTDRLNVYFDE 35
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 145 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD--SDLQLERINVYYNEASGGK 318
MRE + I GQ G QIG WE+ EHGI G D +D + + +++E + GK
Sbjct: 196 MRECLSIHVGQAGVQIGNACWELYCLEHGIQPDGHMPSDQSADRCDDSFSTFFSETASGK 255
Query: 319 Y 321
+
Sbjct: 256 H 256
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 328 RAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNW 447
RAV++D+E G ++++ GP +F + SG GNNW
Sbjct: 76 RAVLIDMEEGVVNNILKGPLHDVFDCQQLITDVSGCGNNW 115
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +1
Query: 502 VRKEAEGCDCLQGFQLTHS 558
+RKEAE CD +QGFQL HS
Sbjct: 1 MRKEAEDCDAIQGFQLLHS 19
>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
Length = 1266
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/53 (41%), Positives = 24/53 (45%)
Frame = -1
Query: 490 PNQPVQPPLCNVLSPSYSPPQTVRRRSCPVGRFAQTARNGRSPWFQAQGPPSQ 332
P+Q VQ PL L P Y PP V TA R P Q QGPP+Q
Sbjct: 1080 PHQAVQQPLPQQLPPQYRPPAIV------------TAAVARPP--QVQGPPTQ 1118
>SB_50693| Best HMM Match : C2 (HMM E-Value=0)
Length = 1049
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -3
Query: 434 APDCPKTKLSGRKICPNGPERTESMVPGSRSTITAR----GTYLP 312
A DCP ++ +GR +CP P +S + ++++I GT+ P
Sbjct: 138 AVDCPTSRKNGRGLCPFPPPPLQSALKRAKASIEVNDFTLGTHTP 182
>SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 547 AENPADNRSLLLLF*LHPVPNQPVQPPLCNVLSPSYSPP 431
A P + LL L PVP+ P Q P +P+++PP
Sbjct: 461 ATPPPSSDGALLDLGLDPVPSAPTQAPTPTPAAPTHAPP 499
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 269 CSLNASMSTITKLQGASTSREL*WWTLSLE 358
CSLN S S+ L+G S R + +W SLE
Sbjct: 907 CSLNDSPSSSIMLEGYSLGRAVDYWVYSLE 936
>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
Length = 1086
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +2
Query: 158 STSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPTCSLNASMSTITKLQGASTS 325
ST+ R + QSSG + A P T +T TC A+ +T QGASTS
Sbjct: 703 STTSRPQPAQQPAQSSGATPLEAQAEAP---TVSTTTCGAAATKTTSAISQGASTS 755
>SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4)
Length = 582
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +1
Query: 139 AIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYS--GDSDLQLERINVYYNEASG 312
A +RE++ +Q G N +G +W + DA S L E + V E
Sbjct: 25 ATVREVITLQFGHYANFVGTHWWNIQESSFCYDAASPKSEINHDCLFREGLTVTGQET-- 82
Query: 313 GKYVPRAVMVDLE 351
Y PR ++ DL+
Sbjct: 83 --YTPRLLLYDLK 93
>SB_28090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 28.3 bits (60), Expect = 4.5
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 226 HGIDATGAYSGDSDLQLERINVYYNEASGGKYVPR-AVMVDLEPGTMDSVRSGPFGQIFR 402
+G+++TG+Y+ LER +V +AS G Y R A M+ + DS S G I R
Sbjct: 104 YGMNSTGSYASQYSKSLER-DVNRGKASVGDYYARKAEMLKILMTDNDSGESCTRGIIPR 162
Query: 403 -PDNFVFGQSGAGNNWAKGHYTEGAELV 483
+ G SG W A V
Sbjct: 163 LHQRYKLGVSGTKVAWTSADIAHYASTV 190
>SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1010
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 425 CPKTKLSGRKICPNGPERTESMVPGSRSTITARGTYLPPEA 303
CP+ + RK P+G + + G+ S + ++G +PP A
Sbjct: 456 CPQGNMDYRKAAPDGRDMQQMGQKGNFSQMLSQGRGMPPGA 496
>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 904
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 478 VQPPLCNVLSPSYSPPQTVRRRSCPVGRFAQTARNGRS-PWFQAQGPPSQL 329
V PP+C+ L S P S A+ A++G + W + + P +QL
Sbjct: 193 VHPPICDCLGCRISSPVVASPESIREAFEAENAKDGNADDWGEVKTPTNQL 243
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +1
Query: 214 ISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYVPRAVMVDLEP 354
+ D G GD L L + +Y E G + V R + LEP
Sbjct: 792 VDDVRGCFQEALKEGDGQLTLNSLIEHYKELEGSEKVARELFAMLEP 838
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,152,401
Number of Sequences: 59808
Number of extensions: 399422
Number of successful extensions: 1263
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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