Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f01
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    27   1.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   1.0  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    27   1.4  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   1.4  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    25   4.2  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   5.6  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    25   5.6  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   7.3  

>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 282 PPLNHPFASNIPLML--RHVYDASARHSFF 199
           P L+H F SN+PL L    + D +A+H +F
Sbjct: 463 PALSHLFPSNMPLQLIQDKLRDLAAKHPYF 492


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 104 FKNIIF*SENFFRIVVISNRMQRKKRQLFNLMKKEWR 214
           F    F S+N+ +I++ +   + K  QLF L   EW+
Sbjct: 207 FDTRYFKSDNYLQIILRNENKKPKNPQLFALKYSEWK 243


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 154 NHNDSKEVFTSKDDIFKMHPLLRTIHPLLRTLLLVSDVVLNYLLSRIKE 8
           +H   ++   S+   F+ HP  RTI     T  L +  + N L+S I+E
Sbjct: 278 SHKSMRDALQSERSFFEHHPAYRTIKDRCGTPYL-AKTLSNLLVSHIRE 325


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -3

Query: 210 HSFFIKLNSCRFFRCIRFEITTILKKFSLQKMIFLKCIH 94
           ++FF  L+    F   RFE   ++++F++ K+I+  C+H
Sbjct: 128 NAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIY--CLH 164


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 241 H*RNITGKRMV*WRMLSNHLLLKYVRRV 324
           H ++ TGKRM+ + +     +LKY+R+V
Sbjct: 236 HKKDQTGKRMLRYYVHQRQRMLKYLRKV 263


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 195 KLNSCRFFRCIRFEITTILKKFSL 124
           KL   +F RC     TT LKK SL
Sbjct: 284 KLTQRQFSRCCELAFTTKLKKLSL 307


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 158 NRMQRKKRQLFNLMKKEWRALAS*TCLSIRGILLAKGW 271
           NR+QR KR +FN + +    + S     + GIL A+G+
Sbjct: 63  NRVQRPKRHVFNCLVQNEPGVLS----RLSGILAARGF 96


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 169 LHPV*NHNDSKEVFTSKDDIFKMHPLLRT 83
           L  V + +DS E   +KDD+FK++  + T
Sbjct: 593 LQYVEDESDSDETDAAKDDLFKVNESIET 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,845
Number of Sequences: 5004
Number of extensions: 31184
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)