Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f01
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81069-5|CAB02995.1|  504|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U21321-11|AAG00044.1|  460|Caenorhabditis elegans Hypothetical p...    27   5.0  
AF083232-1|AAD03690.1|  392|Caenorhabditis elegans nuclear recep...    27   5.0  
AF016438-10|AAK84533.2|  394|Caenorhabditis elegans Nuclear horm...    27   5.0  
AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear recep...    27   6.6  
AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear horm...    27   6.6  
Z47357-2|CAD54175.1|  464|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z47357-1|CAA87421.2|  479|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z81069-5|CAB02995.1|  504|Caenorhabditis elegans Hypothetical
           protein F25H9.5 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 243 LEEYYWQKDGLMEDVVESFIIEVCEESDIK 332
           LEE  WQ +GL  D +   I+ +  E +IK
Sbjct: 368 LEELTWQLEGLQPDQMPYLIVNLSFEEEIK 397


>U21321-11|AAG00044.1|  460|Caenorhabditis elegans Hypothetical
           protein ZK177.1 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 243 MLRHVYDASARHSFFIKLNSCRFFRCIRFEITTILKKFSLQKMIFLK 103
           +   V++ S  HSFF     CR  R    + +T++  F LQ + F K
Sbjct: 24  LFESVFNTSILHSFFSLYTPCRLLRSFG-QRSTVVSDFYLQIISFEK 69


>AF083232-1|AAD03690.1|  392|Caenorhabditis elegans nuclear receptor
           NHR-18 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 6   YSLMRLSK*LRTTSDTNNSVLNNGWMVLNNGCILKISSFEVKTS 137
           +S  RL K   T +   N +L    +++ NG  + +++FE+  S
Sbjct: 214 FSWTRLDKLSETANKQINKMLGKSQLMVGNGACMNMNNFEIDLS 257


>AF016438-10|AAK84533.2|  394|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 18 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 6   YSLMRLSK*LRTTSDTNNSVLNNGWMVLNNGCILKISSFEVKTS 137
           +S  RL K   T +   N +L    +++ NG  + +++FE+  S
Sbjct: 216 FSWTRLDKLSETANKQINKMLGKSQLMVGNGACMNMNNFEIDLS 259


>AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear receptor
           NHR-126 protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 18  RLSK*LRTTSDTNNSVLNNGWMVLNNGCILKISSFEVKTS 137
           RL K   T ++  N V  +  +++ N C + ++ +EV  S
Sbjct: 230 RLDKIFETAANQKNGVFGDSILMVGNECCMDMNDYEVDLS 269


>AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 126 protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 18  RLSK*LRTTSDTNNSVLNNGWMVLNNGCILKISSFEVKTS 137
           RL K   T ++  N V  +  +++ N C + ++ +EV  S
Sbjct: 230 RLDKIFETAANQKNGVFGDSILMVGNECCMDMNDYEVDLS 269


>Z47357-2|CAD54175.1|  464|Caenorhabditis elegans Hypothetical
           protein ZK1128.2b protein.
          Length = 464

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 279 EDVVESFIIEVCEESDIKRRVHQILQLLSNLIAR 380
           ED  +S   E+   S  K+ +HQ++Q L NLI R
Sbjct: 433 EDSYDSISFELISGS--KQHLHQLVQYLKNLICR 464


>Z47357-1|CAA87421.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK1128.2a protein.
          Length = 479

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 279 EDVVESFIIEVCEESDIKRRVHQILQLLSNLIAR 380
           ED  +S   E+   S  K+ +HQ++Q L NLI R
Sbjct: 448 EDSYDSISFELISGS--KQHLHQLVQYLKNLICR 479


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,978,363
Number of Sequences: 27780
Number of extensions: 168360
Number of successful extensions: 389
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)