Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e20
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893...    71   1e-12
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631...    68   8e-12
06_01_0372 + 2684208-2684390,2684867-2684968,2685197-2685290,268...    62   5e-10
10_08_0930 - 21641818-21642240,21642731-21642820,21642902-216429...    61   7e-10
01_03_0306 + 14875755-14876822                                         31   0.61 
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115...    31   1.1  
03_05_0730 + 27208293-27208813,27209052-27209173,27210429-272104...    28   7.6  

>05_06_0131 -
           25888434-25888931,25889105-25889155,25889249-25889331,
           25889733-25889826,25890188-25890310,25890909-25891154
          Length = 364

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 35/63 (55%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
 Frame = +2

Query: 92  ARVTFYPTLLYNVFMEKVTSR-RWYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNE 268
           ARV FYPTLLYNV   +  S  RW+DRID  V+LGA+PF      LK +  V+GVV++NE
Sbjct: 53  ARVLFYPTLLYNVLRNRFESEFRWWDRIDQYVLLGAVPFSSDVPHLK-QLGVRGVVTLNE 111

Query: 269 TYE 277
           +YE
Sbjct: 112 SYE 114


>01_06_0649 +
           30861946-30862179,30862702-30862824,30863104-30863197,
           30863819-30863901,30863984-30864073,30864176-30864562,
           30864903-30864991,30867801-30867907,30868431-30868822
          Length = 532

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
 Frame = +2

Query: 92  ARVTFYPTLLYNVFMEKVTSR-RWYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNE 268
           ARV FYPTLLYNV   +  +  RW+DR+D  ++LGA+PF     +LK +  V+GVV++NE
Sbjct: 49  ARVLFYPTLLYNVLRNRFEAEFRWWDRVDQYILLGAVPFPSDVPRLK-QLGVQGVVTLNE 107

Query: 269 TYE 277
            YE
Sbjct: 108 AYE 110


>06_01_0372 +
           2684208-2684390,2684867-2684968,2685197-2685290,
           2685450-2685532,2685684-2685773,2686931-2687173
          Length = 264

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
 Frame = +2

Query: 92  ARVTFYPTLLYNVFMEKVTSR-RWYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNE 268
           AR  FYPTLLYNV   KV +  RW+D +D  ++LGA+PF+    +L ++  V GV+++NE
Sbjct: 32  ARALFYPTLLYNVVRSKVQAEFRWWDEVDQFILLGAVPFRRDVPRL-QKLGVYGVITLNE 90

Query: 269 TYE 277
            +E
Sbjct: 91  PFE 93


>10_08_0930 -
           21641818-21642240,21642731-21642820,21642902-21642984,
           21643512-21643605,21644366-21644488,21644893-21645168
          Length = 362

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
 Frame = +2

Query: 92  ARVTFYPTLLYNVFMEKVTSR-RWYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNE 268
           AR+ FYPTL+YNV   +      W+D++D+ V+LGA+PF     +LK E  V GVV++NE
Sbjct: 63  ARMLFYPTLVYNVVRNRFEPHFHWWDQVDEHVLLGAVPFPSDVLRLK-ELGVCGVVTLNE 121

Query: 269 TYE 277
           +YE
Sbjct: 122 SYE 124


>01_03_0306 + 14875755-14876822
          Length = 355

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 324 LTTNNVTSASLENNCSSYVSFIETTPFTFSSSFNCFVI 211
           +TTN   S++   N +S+   + T+P+ FS ++N FV+
Sbjct: 89  ITTNCYNSSTGSANVNSWWMDLSTSPYRFSDAYNTFVV 126


>11_06_0738 - 26807046-26807129,26807720-26807957,26809374-26811509,
            26812145-26813253
          Length = 1188

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 166  VIPASTGHLLH-EDIVQKGRVECNSREHCRTHGES 65
            +IP    HL   E+I  K RV C + +HCR   ES
Sbjct: 973  IIPVGIEHLSGLEEISAKIRVACTAHDHCRRFAES 1007


>03_05_0730 +
           27208293-27208813,27209052-27209173,27210429-27210477,
           27210689-27210938,27211474-27211619,27211699-27211846,
           27212544-27212612,27212641-27212784
          Length = 482

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +2

Query: 158 WYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMN-----ETYELQLFSND--AEVTLL 316
           W +   + ++ G+  F G T Q + E + +G  S+N       YE  LFS+   A + +L
Sbjct: 393 WSNPASEVLLTGS--FDGWTSQRRMERSERGTFSLNLRLYPGRYEALLFSSHLIAPLPIL 450

Query: 317 VVRYILNPNGYVPPLR 364
            +++I++      PLR
Sbjct: 451 QIKFIVDGVWRNDPLR 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,969,885
Number of Sequences: 37544
Number of extensions: 298227
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)