Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e20
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)                  99   4e-21
SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)                    77   2e-14

>SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)
          Length = 195

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 47/77 (61%), Positives = 62/77 (80%)
 Frame = +2

Query: 74  MSTAMFARVTFYPTLLYNVFMEKVTSRRWYDRIDDTVILGALPFQGMTKQLKEEENVKGV 253
           +S+++ ARV FYPTLL+NV ME   SRRWYDRID TVILGALPF+ +T++L EEENV+ V
Sbjct: 13  LSSSVGARVLFYPTLLWNVVMEG-GSRRWYDRIDSTVILGALPFKSLTQKLVEEENVRAV 71

Query: 254 VSMNETYELQLFSNDAE 304
           V++NE +E + F N +E
Sbjct: 72  VTLNEEFETKHFCNTSE 88


>SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)
          Length = 881

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 38/71 (53%), Positives = 52/71 (73%)
 Frame = +2

Query: 92  ARVTFYPTLLYNVFMEKVTSRRWYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNET 271
           ARV F+P+LL+ V  E   SRRW+DRID TVILGALPF+  T++L  +ENVKGV+++NE 
Sbjct: 81  ARVLFFPSLLWIVATES-RSRRWFDRIDSTVILGALPFKSQTQKL-IDENVKGVITLNEE 138

Query: 272 YELQLFSNDAE 304
           +E +   N  +
Sbjct: 139 FETKHLCNSKQ 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,850,886
Number of Sequences: 59808
Number of extensions: 368175
Number of successful extensions: 1050
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)