Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e20
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-11|CAA92677.1|  150|Caenorhabditis elegans Hypothetical p...    32   0.41 
Z81534-2|CAB04344.2|  226|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U53141-2|AAA96104.2|  491|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z68315-11|CAA92677.1|  150|Caenorhabditis elegans Hypothetical
           protein F28C6.8 protein.
          Length = 150

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 197 LPFQGMTKQLKEEENVKGVVSMNETYELQLFSN 295
           +PF+ M  +L ++ENV GVV   E +EL+   N
Sbjct: 1   MPFRSMKDELIQKENVGGVVCCTEEFELKAAMN 33


>Z81534-2|CAB04344.2|  226|Caenorhabditis elegans Hypothetical
           protein F37H8.3 protein.
          Length = 226

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 61  QNFHHEYGNVRESYILPDPFVQCLHGE 141
           Q   H+YGN     ++  PF +CL GE
Sbjct: 78  QYLKHKYGNKLTDNVVIKPFTECLRGE 104


>U53141-2|AAA96104.2|  491|Caenorhabditis elegans Hypothetical
           protein C14C11.4 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = -3

Query: 273 YVSFIETTPFTFSSSFNC---FVIP*KGRAPRITVSSILSYQRLLVTFSMKTLYKRVG*N 103
           Y+    TTPF   ++F C   F +P KG   R++V + L   +  + F+    Y R   N
Sbjct: 45  YIPENSTTPFEIRANFTCKYQFFVP-KGTYLRLSVINSL-LDKDYIEFADSVGYVR---N 99

Query: 102 VTLANIA 82
           +T++NIA
Sbjct: 100 LTVSNIA 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,033,602
Number of Sequences: 27780
Number of extensions: 271855
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)