Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e20
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.5  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   7.9  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 363 RSGGTYPFGFKIYLTTNNVTSAS 295
           +SG T PF F      NN ++AS
Sbjct: 305 KSGSTVPFNFMFIADLNNQSTAS 327


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 215 TKQLKEEENVKGV 253
           TKQ+K+E N KGV
Sbjct: 542 TKQIKDEANKKGV 554


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 197 LPFQGMTKQLKEEENVKGVV 256
           L  Q ++KQ+ EE+  KG++
Sbjct: 38  LQVQHISKQISEEQRYKGMI 57


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 197 LPFQGMTKQLKEEENVKGVV 256
           L  Q ++KQ+ EE+  KG++
Sbjct: 38  LQVQHISKQISEEQRYKGMI 57


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -3

Query: 363 RSGGTYPFGFKIYLTTNNVTSASLENNCSSYVSFIETT 250
           R GG       IY  T  V    LEN     V++ E T
Sbjct: 40  RRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHT 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,271
Number of Sequences: 438
Number of extensions: 3639
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)