Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e18
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    28   0.99 
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.0  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    27   3.0  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   3.0  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   4.0  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   7.0  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.0  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    25   7.0  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    25   7.0  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   7.0  

>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 527 IRSPLKHLKYNNCIWVCRFYMLH*NVLSKFD 619
           +R+ +K LKY +   VCR + L  N+L  +D
Sbjct: 679 VRTYIKALKYGDAFKVCRTHRLDLNILFDYD 709


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 77  LHIFYRFCVGFFHYTLTLS 21
           LH F+ F +  +HY+L LS
Sbjct: 60  LHFFHHFTIACYHYSLCLS 78


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 638 FMSFLSHRIY*VHFNATYKTYKPK 567
           F SFL+  ++  HF+ T++ Y+PK
Sbjct: 39  FGSFLADDLFGKHFDETFEIYQPK 62


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = -2

Query: 417 FLHSILAVFESVFHDELSQADAPDQHIARPIDLRNVKIEQYPVSF*HLVQHGHGVVIDKI 238
           F+ + +A + +     L + +APD+   + +++  + +E   V+   +    HG++I KI
Sbjct: 253 FISTAVADYTNKILSLLKKEEAPDELTQKLLEVLGLLLEYQQVNILKIWPELHGLLISKI 312

Query: 237 PLVPQEIA 214
              P  I+
Sbjct: 313 SYDPNLIS 320


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 340 MLIWCIGLRKFIVKDGLKDSEYGMKK 417
           M+I C+G    IV D ++ S + MKK
Sbjct: 120 MIIECVGWNGMIVSDKMRKSVFHMKK 145


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 74  VITSIKAY*QSPGEFHIKHAYFYCITSLVITDSL 175
           V++++  +        IK AY YCI S+ I+ S+
Sbjct: 260 VLSTLSTFSNELHTMPIKRAYIYCIISVAISFSI 293


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 74  VITSIKAY*QSPGEFHIKHAYFYCITSLVITDSL 175
           V++++  +        IK AY YCI S+ I+ S+
Sbjct: 260 VLSTLSTFSNELHTMPIKRAYIYCIISVAISFSI 293


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 35  CNEKNPRKIYKICVITS 85
           CN K P K Y +C I S
Sbjct: 169 CNPKEPPKTYPVCTIRS 185


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 480 RKYDSKEQRIKTNVSYLQPSLFLHSILAVFES 385
           R Y  K+ +I+  ++YL P LF+H ++   ES
Sbjct: 103 RVYKKKKGKIE-ELNYLPPVLFIHGLMMNSES 133


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 343 LIWCIGLRKFIVKDGLKDSEYGMKKQRWLKIAHIS 447
           LI  +G+R+    D   D+++  K Q+ LK  H+S
Sbjct: 259 LIRLLGIRRVFENDPEIDAQFTTKSQQLLKSYHLS 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,391
Number of Sequences: 5004
Number of extensions: 59468
Number of successful extensions: 194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)