Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e18
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    56   3e-08
AF040652-5|AAB95022.2|  378|Caenorhabditis elegans Hypothetical ...    31   0.92 
Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z68114-4|CAA92159.1|  324|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z92777-4|CAB07170.1|  304|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF016684-16|AAB66213.1|  506|Caenorhabditis elegans Hypothetical...    28   6.5  
Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    27   8.6  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    27   8.6  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    27   8.6  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    27   8.6  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 21/75 (28%), Positives = 43/75 (57%)
 Frame = +1

Query: 172 VKMYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTDRILFNFDISKIDWPRYMLIW 351
           VK+Y K++KM     +F    W+           +M+  D+  +NFD+ ++DW  Y+  +
Sbjct: 379 VKLYSKVWKMIETLHFFTTRGWSFNARGLPEFFEKMTPADQKEYNFDVRQVDWNSYLFDY 438

Query: 352 CIGLRKFIVKDGLKD 396
            +G++KF++K+ L++
Sbjct: 439 VMGIKKFLLKENLEN 453


>AF040652-5|AAB95022.2|  378|Caenorhabditis elegans Hypothetical
           protein T05A8.5 protein.
          Length = 378

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +3

Query: 258 RGHAEPNVKN*QDIVQF*HFEDRLAALYADLVHRLEKVHRERRTQRQRVWNEETEMAEDS 437
           RGH E NV +   IVQ    +  LA++ AD   RL K+  + +   + +WNE+  +  D+
Sbjct: 267 RGH-EGNVTS-LSIVQMDQTKRLLASVSADRQIRLWKIEEDGQAVLKPIWNEDVPLEADN 324


>Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical
           protein F08A8.6 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -2

Query: 321 LRNVKIEQYPVSF*HLVQHGHGVVIDKIPLVPQEIAVQQRHFVYLFIHFNE 169
           ++ +K+E +PV         H ++ D  P+VP+E    ++ F  L +H+ +
Sbjct: 50  VKKIKLENHPVLTWKFCLLVHKLLRDGHPVVPKEAYRNEKRFTQLALHWKD 100


>Z68114-4|CAA92159.1|  324|Caenorhabditis elegans Hypothetical
           protein F17A2.6 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
 Frame = +1

Query: 127 TCIFLLYHVS-CYYRFVKMYEKIYKMSL-LYGY------FL-RNQWNLVDDNTVAMLNQM 279
           TC+F + HVS CY    +    +  M +  YGY      F+  + +++V  +TVA    +
Sbjct: 51  TCVFQVIHVSACYLMQFRQVSNLVPMEVWSYGYGRHFEAFVGYSLYHVVQTSTVASGISV 110

Query: 280 SKTDRILFNF--DISKIDWPRYMLIWCI 357
             T  + +    ++    W RY++I CI
Sbjct: 111 VMTLFLKYEAARNVKLTSWKRYLIITCI 138


>Z92777-4|CAB07170.1|  304|Caenorhabditis elegans Hypothetical
           protein C17H1.6 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 172 VKMYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTDRILFNFDISKID 327
           V+  EK +     +G  +   W  V++N   +LN+M +T+ I      +K+D
Sbjct: 68  VRFQEKCHNERKQFGLKI---WKTVEENNADVLNEMQRTNEIKLGNQQNKVD 116


>AF016684-16|AAB66213.1|  506|Caenorhabditis elegans Hypothetical
           protein F45C12.16 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = -2

Query: 444 NVSYLQPSLFLHSILAVFESVFHDELSQADAPDQHIARPIDLRNVKIEQYPVSF*HLVQH 265
           NV YL  S+ +H+          +  S A   D+   + +  +N+K    PV    + +H
Sbjct: 387 NVQYLFGSVSIHNTNLKNIDFLANLRSMAVLNDEPAIKIVSNQNLKYAYLPVLSTIITKH 446

Query: 264 GHGVVIDKIPLVPQE 220
              VV+   PL+P +
Sbjct: 447 QRTVVVHNNPLLPSD 461


>Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical
           protein W08E3.3 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 321 DRLAALYADLVHRLEKVHRERRTQRQRVWNEETEMAEDSSH*FLYA 458
           D+   +  D + R++K   E++  RQ +WNE+ E+   + H FL A
Sbjct: 175 DKTKKIEYDTLVRVKKCLEEKKPVRQELWNEK-EIEILNKHLFLTA 219


>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 178 MYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTD-RILFNFDISK 321
           M   +Y++SL      +  W L +D T    NQ+ K D RILFN   SK
Sbjct: 139 MQVNLYELSLEVKTDSKLMWKLCED-TFPEFNQLCKMDKRILFNNFYSK 186


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 178 MYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTD-RILFNFDISK 321
           M   +Y++SL      +  W L +D T    NQ+ K D RILFN   SK
Sbjct: 139 MQVNLYELSLEVKTDSKLMWKLCED-TFPEFNQLCKMDKRILFNNFYSK 186


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 178 MYEKIYKMSLLYGYFLRNQWNLVDDNTVAMLNQMSKTD-RILFNFDISK 321
           M   +Y++SL      +  W L +D T    NQ+ K D RILFN   SK
Sbjct: 139 MQVNLYELSLEVKTDSKLMWKLCED-TFPEFNQLCKMDKRILFNNFYSK 186


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -3

Query: 632 SFLSHRIY*VHFNATYKTY---KPKCNCYI 552
           SF  HR+     ++TYKTY   + KCNC+I
Sbjct: 112 SFCDHRV-----DSTYKTYHYEQEKCNCFI 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,942,104
Number of Sequences: 27780
Number of extensions: 329627
Number of successful extensions: 864
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)