Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e17
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0028 - 19393700-19393899,19394058-19394116,19394437-193945...    28   7.2  
04_01_0003 + 79564-79698,79879-79956,81025-81388,82399-82437,825...    28   7.2  
06_03_0046 - 15852653-15854560                                         27   9.6  
06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139...    27   9.6  

>11_06_0028 -
           19393700-19393899,19394058-19394116,19394437-19394521,
           19395305-19395474,19397534-19397613,19398288-19398392,
           19399268-19399308,19399400-19399438,19400473-19400818,
           19401762-19401815,19402249-19402350
          Length = 426

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 556 LRSMGSRYHLPKKQNLQHTTRIESTKIIMKNLKR 455
           ++S  S  H PK  N    T  E TKII+K  KR
Sbjct: 153 VKSGRSAQHKPKGSNADAKTDKEDTKIIIKGKKR 186


>04_01_0003 +
           79564-79698,79879-79956,81025-81388,82399-82437,
           82561-82601,83258-83362,83914-83919,84044-84123,
           86744-86913,87664-87748,88067-88125,88451-88464
          Length = 391

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 556 LRSMGSRYHLPKKQNLQHTTRIESTKIIMKNLKR 455
           ++S  S  H PK  N    T  E TKII+K  KR
Sbjct: 178 VKSGRSAQHKPKGSNADAKTDKEDTKIIVKGKKR 211


>06_03_0046 - 15852653-15854560
          Length = 635

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +3

Query: 540 DPI---DLNCIVQWISSICLD*GRIYLDVNHPIWC 635
           DPI   +LN       + CLD G I  D + P+WC
Sbjct: 214 DPISARNLNSNFMLSCTRCLDKGHIASDCSEPVWC 248


>06_01_0179 -
           1388602-1389572,1390060-1390129,1390346-1390439,
           1390587-1390687,1391152-1391220,1391328-1391482,
           1392193-1392241,1392611-1392739,1392825-1393580,
           1394711-1394902
          Length = 861

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 218 IAISPMIDVSEYKQIQKEARKNIRQEDIQPGNM 316
           +   P+ID +     QK++R +IRQ+DI   N+
Sbjct: 183 VTSQPVIDAAGALHAQKKSRVDIRQDDILQHNL 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,430,451
Number of Sequences: 37544
Number of extensions: 201746
Number of successful extensions: 410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)