Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e17
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-12|CAE17919.1|   92|Caenorhabditis elegans Hypothetical p...    36   0.033
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    29   2.8  

>Z36753-12|CAE17919.1|   92|Caenorhabditis elegans Hypothetical
           protein T09A5.15 protein.
          Length = 92

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 218 IAISPMIDVSEYKQIQKEARKNIRQE-DIQPGNMKVWSDPFERK 346
           + + P      YK  QKE R  +R   + Q G   VW DPFERK
Sbjct: 49  VTLYPKYHHDYYKNAQKEERALLRSSREQQAGPQNVWIDPFERK 92


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
            protein Y39A1C.2 protein.
          Length = 1066

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 9    SWLSII*VQDIICYMVIVEIQIIKIDKTHNSECLYTFHEN-KILKWLYFVV 158
            +WLS+    D+ C +  V   I   D   N +    FH N +++KWL+ ++
Sbjct: 908  TWLSLFAPNDLQCLISGVNSDIDLADLKRNVQYFGGFHGNHRLIKWLWDIL 958


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,913,132
Number of Sequences: 27780
Number of extensions: 215508
Number of successful extensions: 529
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)