Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e16
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                33   0.18 
SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)                 29   2.9  
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035)         28   5.1  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   28   6.7  
SB_38342| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
 Frame = +1

Query: 286 WVAARSSCHQLEQLDAMLDK------ELALEGRAYGNDALVADEPLPLANAHALHGVPPM 447
           W  ARS+  + E+LD + +K      +L LEG   G         +PL N + +  +  M
Sbjct: 336 WCNARSNAKEREELDRLFEKYVPASVDLILEGILDGKQGKKLKTIIPLTNLNMVEQLSHM 395

Query: 448 LSSVLPETSQPSSSRPSL 501
           L ++LP     +   P +
Sbjct: 396 LDALLPPAESSNFLGPDV 413


>SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 103 PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 201
           PD  AT  + PEY   +     +PPP Y   ++
Sbjct: 28  PDMPATFQIPPEYTVEDPIKIDQPPPPYMDTIT 60


>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
          Length = 540

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +1

Query: 121 ITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWV 291
           I+ K   P  E  STS     YR+RV  ++++AK  A  V+   F L T    ++W+
Sbjct: 360 ISSKNRIPVDETSSTSRGGVGYRNRVE-NIKVAKTVAAIVL--MFALCTAPFQTAWI 413


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 91  KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 213
           + H P S  + T +P  PP    +T++ PPAY  R S ++Q
Sbjct: 91  RPHTPPSCQSNTPRPLTPPPRQSNTTQ-PPAYPPRQSYALQ 130


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +1

Query: 133 PEYPPSEVYSTSEPPPAYRHRVSTSVQIAKI---AALTVVASSFILGTFILASS 285
           P  PP       +PPPA  H +   + I  +     + ++   FI G+F L+SS
Sbjct: 92  PAPPPPPAQPAPQPPPAPPHFLPFIIIITTVIITIVINIIIIRFISGSFRLSSS 145


>SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035)
          Length = 169

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 430 HGVPPMLSSVLPETSQP-SSSRPSLFKDDA 516
           +G+PP  ++ +    +P SS+ PS+F+DD+
Sbjct: 31  YGIPPSAANFIVPRKRPLSSTAPSVFRDDS 60


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 79  VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIA 219
           V++  +  P    +I  +PE P + ++S   PP     +V++S Q +
Sbjct: 514 VMLSTQQMPSPNTSIKQEPESPNTCIFSQQPPPQPAIKKVASSPQFS 560


>SB_38342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 133 PEYPPSEVYSTSEPPPAY 186
           P++PP + Y T +PP  Y
Sbjct: 29  PQHPPQQFYPTQQPPAQY 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,321,464
Number of Sequences: 59808
Number of extensions: 402187
Number of successful extensions: 1307
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)