Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e16
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.00 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.3  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
 Frame = +1

Query: 103 PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFI-LA 279
           PD M T+T +P+   S+   T+        R      + K+  L  +       T + L 
Sbjct: 31  PDDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGPETSRHTTLGLL 90

Query: 280 SSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHALHGVPPMLSS 456
           +       S  + E+  A+  ++L+ E R              L   H LHG+  + SS
Sbjct: 91  TKAKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGLHGLSSS 149


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 415 NAHALHGVPPMLSSVLPETSQPSSSRPSLFK 507
           NA   +GV  M  ++L  T +   + P++FK
Sbjct: 112 NADGEYGVTTMTKAILHYTGKVLWTPPAIFK 142


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 179 GGGSDVLYTSEGGYSG 132
           G G DVL T E  +SG
Sbjct: 491 GFGKDVLATDERSFSG 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,307
Number of Sequences: 438
Number of extensions: 3730
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)