Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e14
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   5.4  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   5.4  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   7.1  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    24   9.4  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 204 PFSVVRLH--LKNIYTQGSLINH*TRLLT*N*VSNTGSKCFVRFSSNVP 344
           P+S  + H  LK +Y + S+I+   +LLT   VSN+ S+    F+S +P
Sbjct: 109 PYSPKQTHTVLKRLYDRQSVISDHEKLLTPQNVSNS-SQILSPFTSLLP 156


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 262 FIRLPCVYIFFKWSRTTEKGSIEYE 188
           ++++PC +++ +W++T  K S E E
Sbjct: 472 WMQIPCDWVYIQWAQTYIKQSSEPE 496


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 445 SRVVFLPYQA*NQPS*QPTKSHQSSSITTSEVSNGTLDENLTKHLLPVLDTQFY 284
           SRVV    Q  NQP+     + QS  + + +    T      + + PV  TQ+Y
Sbjct: 349 SRVVSRSGQNNNQPAQPGQYNQQSQPVQSYQSGQSTQHFQPVQPIQPVQSTQYY 402


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 385 SHQSSSITTSEVSNGTLDENLTKHLLPVLDTQF 287
           SH+SS +T  + +N +   N   H++   + Q+
Sbjct: 203 SHRSSPVTNRQTNNTSALSNSNAHIMSSFEDQY 235


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 104 QLWKCTSVGKCWKGA 148
           Q WK T V + WKGA
Sbjct: 88  QTWKTTEVPEGWKGA 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,594
Number of Sequences: 5004
Number of extensions: 37542
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)