Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8e14
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1046 - 10756062-10756326,10757618-10757782,10757901-107582... 30 0.75
05_07_0164 - 28099839-28099861,28100148-28100265,28100546-281007... 28 3.0
11_04_0443 - 17808897-17809110,17809169-17813652 28 4.0
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 28 4.0
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666... 27 7.0
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 27 7.0
01_06_1589 - 38477318-38477411,38477833-38478863 27 7.0
06_03_0984 + 26570712-26570801,26571454-26571633 27 9.2
03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851... 27 9.2
>12_01_1046 -
10756062-10756326,10757618-10757782,10757901-10758206,
10758279-10758377,10760555-10760670,10760756-10760848,
10760946-10761107,10761784-10762170
Length = 530
Score = 30.3 bits (65), Expect = 0.75
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 226 WSRTTEKGSIEYELNAFFDRALAAKSSAFPTFPHTCALPQLLNFFN 89
++R T S L + R L ++ A P+FPH A + FF+
Sbjct: 229 FARPTHSRSFSRALPGWLSRGLVGRTLADPSFPHKIAFEFMATFFS 274
>05_07_0164 -
28099839-28099861,28100148-28100265,28100546-28100770,
28100843-28101015,28101292-28101385,28102957-28103048,
28103370-28103400
Length = 251
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 121 CALPQLLNFFNLSPLLDTLTCTN 53
C LPQ+LNF+ +S LL L N
Sbjct: 182 CKLPQVLNFYEVSGLLPELRILN 204
>11_04_0443 - 17808897-17809110,17809169-17813652
Length = 1565
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 313 LLPVLDTQFYVNSLV*W--FIRLPCVYIFFKWSRTTEKGSIEYELNAFFDRA 164
+LP LD QFY +S++ + + L V + FK + TT + E+ NA A
Sbjct: 831 ILPFLDVQFYGDSILDYKPELELLGVLVGFKDNYTTVIDNFEFSSNAISSEA 882
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 159 PPSPAPFQHFPTLVH 115
PPSPAP QHF +H
Sbjct: 278 PPSPAPIQHFARPLH 292
>10_08_0371 +
17265691-17265788,17265873-17265971,17266586-17266628,
17267250-17267321,17267400-17267495,17267609-17267842,
17267914-17268097,17268247-17268358,17268447-17268533,
17268703-17268841,17269628-17269718,17270045-17270154,
17270309-17270413,17270982-17271055,17271379-17271454,
17271786-17272022,17272419-17272490,17273082-17273153,
17273240-17273304,17273306-17273383,17273384-17273486,
17273769-17273858,17274873-17274980,17275063-17275113,
17276126-17276203,17276284-17276346,17276944-17277140,
17277243-17277312,17277640-17277828
Length = 1030
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 376 SSSITTSEVSNGTLDENLTKHLLPVL 299
SS + SE SNG L E+++ H L +L
Sbjct: 910 SSQLMESEGSNGKLQESISSHFLRLL 935
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 359 SCNATRLVTFGWLLTWLILSLI 424
+C A + FGWL+T L+LS +
Sbjct: 559 TCIAKNMSAFGWLVTTLVLSCL 580
>01_06_1589 - 38477318-38477411,38477833-38478863
Length = 374
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 159 PPSPAPFQHFPTLVHFH 109
PP+PAPF P LV+ H
Sbjct: 15 PPAPAPFGPLPVLVYDH 31
>06_03_0984 + 26570712-26570801,26571454-26571633
Length = 89
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 105 NCGSAQVWGNVGKALDLAARALSKK 179
NCG+ + GN + LD A+AL+++
Sbjct: 61 NCGALIILGNANRELDQRAKALAEE 85
>03_03_0254 +
15884149-15884295,15884765-15884803,15884958-15885136,
15887175-15887310,15887769-15887865,15888448-15888534,
15888621-15888721,15888905-15888939,15889520-15889577,
15889650-15889724,15890048-15890135,15890155-15890308,
15890395-15890638
Length = 479
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 409 QPS*QPTKSHQSSSITTSEVSNGTLDENLT 320
+P P H+SS + VSN +D+ +T
Sbjct: 245 RPDNSPCGPHRSSPVINQRVSNAAMDQGIT 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,967,871
Number of Sequences: 37544
Number of extensions: 205060
Number of successful extensions: 546
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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