Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e14
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)           31   0.58 
SB_53452| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)                        27   5.4  
SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   9.5  

>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
          Length = 806

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -1

Query: 442 RVVFLPYQA*NQPS*QPTKSHQSSSITTS-EVSNGTLDENLTKHLLPVLDTQFYVNSL 272
           R   LPY + N PS Q   S  +S++T S EV+  T+  +     + + +TQF   SL
Sbjct: 327 RESLLPYSSSNTPSKQNPVSDSASTVTQSTEVTASTVASSAANAGVVLTETQFATKSL 384


>SB_53452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 450 FLLVSFSCPIKLKINQVNSQPKVTNRVALQLVKYPMERWTKISQNICFL 304
           FL+ +   P  + +N+ N  PK+   V  +L     ++WT++SQ+IC L
Sbjct: 294 FLITAVEIPF-IPLNKRN-YPKIEPLV--ELTSNAGDKWTELSQDICHL 338


>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 2590

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 337  LDENLTKHLLPVLDTQFY 284
            L  NL+ HL+ V+DTQFY
Sbjct: 2265 LSVNLSAHLVVVMDTQFY 2282


>SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 356

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 106 LLNFFNLSPLLDTLTCTNSK*C 41
           ++ FFN SPLL T+T  N+  C
Sbjct: 155 VIAFFNASPLLYTMTLDNNNLC 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,156,562
Number of Sequences: 59808
Number of extensions: 241304
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)