Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e14
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   2.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   2.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   3.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   3.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 159 PPSPAPFQHFPTLVHFH 109
           PPS  P QH P+  H H
Sbjct: 313 PPSYHPHQHHPSQYHPH 329


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 284 VKLSI*HRKQMFCEIFVQRSIGYF---TSCNATRLVTFGWLLTWL 409
           + LS  +  ++ CEI   RS+GY+       +  +V   W+  WL
Sbjct: 200 IHLSTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWL 244


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 278 INVKLSI*HRKQMFCEIFVQRSIGYF---TSCNATRLVTFGWLLTWL 409
           + + L+  +  ++ CEI   RS+GY+       +  +V   W+  WL
Sbjct: 198 MEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWL 244


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 278 INVKLSI*HRKQMFCEIFVQRSIGYF---TSCNATRLVTFGWLLTWL 409
           + + L+  +  ++ CEI   RS+GY+       +  +V   W+  WL
Sbjct: 137 MEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWL 183


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 191 RVECXXXXXXSRQVQRLSNISPHLCTSTVVKLFQFVTF 78
           RVEC        Q     N   H+C +T  +LFQ V +
Sbjct: 216 RVECKM-----EQQGNYENAVSHICNATNKQLFQLVAW 248


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 191 RVECXXXXXXSRQVQRLSNISPHLCTSTVVKLFQFVTF 78
           RVEC        Q     N   H+C +T  +LFQ V +
Sbjct: 216 RVECKM-----EQQGNYENAVSHICNATNKQLFQLVAW 248


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 337 LDENLTKHLLPVLDTQFYV 281
           +DE   KHL+ V   +F++
Sbjct: 400 IDETTLKHLIDVASDRFFI 418


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 337 LDENLTKHLLPVLDTQFYV 281
           +DE   KHL+ V   +F++
Sbjct: 400 IDETTLKHLIDVASDRFFI 418


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 4   YMSRLERVNCFN 39
           Y+SR ER+N +N
Sbjct: 446 YLSRSERINYYN 457


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 141 FQHFPTLVHFHSC*TFSICHLYW 73
           F  FPT  H  +   F +  +YW
Sbjct: 192 FNAFPTYTHEITYSLFGMIMMYW 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,176
Number of Sequences: 438
Number of extensions: 2577
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)