Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e13
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    39   6e-04
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    29   0.68 
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    28   0.90 
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   1.6  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.6  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   2.1  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    27   2.7  
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    27   2.7  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   2.7  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   3.6  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   6.3  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   6.3  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   6.3  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   8.4  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.4  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +1

Query: 406 MSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQPRNPYFGATIGRYANIIRDAT 585
           + V I +YGA + +++             GF+    Y    NP+FGATIGR+AN I +  
Sbjct: 378 LEVSIANYGALVQAVRYKGRNLVN-----GFNDFSRYKLKENPFFGATIGRFANRIANGQ 432

Query: 586 MVV 594
             V
Sbjct: 433 FEV 435


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 594 HHHCGIPNDVCVAPNSSSEIWVSWLEIFF*SVESCDHIIRNAFFVRN 454
           +HHCGI    CV  N  SE ++        + +S +H I + FF  N
Sbjct: 209 NHHCGIYRSNCVVINKDSE-FLQMCRPINTTQDSNEHSIGSLFFYLN 254


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
 Frame = +1

Query: 106 FPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAF 285
           +P+++    + +     EE+T+ V  + + K P +E + D      K  K  K  T+   
Sbjct: 204 YPIQLVVTREVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKETTTETE 263

Query: 286 EESKQ----MLKEIKVTNEEAKSPCSSSTN 363
           E +K          +VT EE  S   S TN
Sbjct: 264 ELNKTKPIWTRNPSEVTKEEYASFYKSLTN 293


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 208 VELIVDGFGLMPKSMKVPKNRTSNAFEESKQMLKE 312
           +E ++D F  + + +K+P+    NA E  K +LKE
Sbjct: 384 IERLLDSFPAIFQDVKIPEPVVGNALEVVKLLLKE 418


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 178 TPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEESKQMLKEIKVTNEEAKSPCSS 354
           TP PEP   ++E + +G        +  KN  S +   S  +L   K+ N  +K    S
Sbjct: 245 TPTPEPSDKNLEKLKNGASKQASESQSLKNMESLSLARSSPILTSEKLKNGASKQAIES 303


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 112 VKMAEEGDEKASGDVEEDTKTVTPQPEP 195
           +K A EGDEK  G V++    +  +P P
Sbjct: 260 IKFAGEGDEKPDGTVQDIQFVLAEKPHP 287


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 499 RILRPHHQERLFCQE 455
           R+LR  HQERL CQE
Sbjct: 307 RLLRYDHQERLTCQE 321


>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 293 DSSKAFEVRFLGTFIDLGINPNPSTINSTSGI 198
           D S++F++ FLG   D G +  P      SGI
Sbjct: 69  DKSQSFDIAFLGAPFDTGTSYRPGARFGPSGI 100


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 429 IRNYLNTHPIFRSPSVPSNHFN 364
           IRN++ THP ++  SV ++  N
Sbjct: 624 IRNFITTHPSYKQDSVVNDEIN 645


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 127 EGDEKASGDVEEDTKTVTPQPEPK 198
           +GDE+   DVEE  +T++ +P  K
Sbjct: 438 DGDEEVDIDVEETVETISEKPSKK 461


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 82  YISF*NSKFPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMP 243
           YI+  NS   V  A  G    +GD+E+ ++ +   PE       L+V GFG+ P
Sbjct: 102 YITIVNSLLVVCSAF-GSSVIAGDLEDVSRDLKVGPEVANLSCSLMVVGFGIGP 154


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 241 PKSMKVPKNRTSNAFEESKQMLKEIKVTNEEAKSPCSSSTNIEVV 375
           P  +  PK+ T+N   +S +   + +V +E       S TN  ++
Sbjct: 347 PHGISSPKHSTNNLSSKSGKFHSDFRVVSENVLLQARSETNSPII 391


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +1

Query: 127 EGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEESK--- 297
           E  EKA  D+ + +  V P+ E     +   VD F   P   +  +    + + E     
Sbjct: 166 EKSEKAVADLNDSSTDVVPESEVSFQTISSRVDNFFAAPLPSEQAEELIEDDYAEQPEQA 225

Query: 298 --QMLKEIKVTNEEAK 339
             Q +++  ++++EA+
Sbjct: 226 VGQPIEQQSISDDEAR 241


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 493 GFDTLEEYFQPRNPYFGATIGRYANIIRDATMV 591
           GFD L +YF  RN Y    +   +N ++DA ++
Sbjct: 560 GFDILYDYFVKRNRY--GVLHSKSNSVKDAYII 590


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +1

Query: 154  VEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEESKQMLKEIKVTNEE 333
            + E   T  P+P  +   +   V   GL+P S   P   ++     +     E +  ++ 
Sbjct: 1251 IGESKSTRKPRPTKRQRQIMKQV-AEGLLPASAIAPPKSSNEKKSSNNVKAVEAETKSKS 1309

Query: 334  AKSPCSSSTNI 366
             KSP  + TNI
Sbjct: 1310 EKSPKKNGTNI 1320


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 564 CVAPNSSSEIWVSWLEI 514
           C+  N  +E W+SW+ I
Sbjct: 351 CIKHNQHNEKWISWIRI 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,677
Number of Sequences: 5004
Number of extensions: 44995
Number of successful extensions: 153
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)