Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8e13
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0) 31 0.93
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37) 30 1.6
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 29 2.9
SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 28 5.0
SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_37594| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23) 27 8.7
>SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)
Length = 326
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 517 FQPRNPYFGATIGRYANIIRDA 582
F+ PYFG+TIGR AN I +A
Sbjct: 103 FEDNPPYFGSTIGRVANRIANA 124
>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Frame = +1
Query: 79 KYISF*NSKFPVKMAEEGDEKASGDVE-EDTKTVTPQ-PEPKIPDVELIVDGFGLMPKSM 252
K + NS+F ++ K++ D E T ++ + E K+ + + + L
Sbjct: 667 KELQLANSRFSDLESDLAQAKSAADTHREKTNSLQKELAEAKLSESKALRKVSSLEETLS 726
Query: 253 KVPKNRTSNAFEESKQMLKEIKVTNEEAKSPCSSSTNIEVVRRYTWRTKNRMSVQIISYG 432
K P N SNA E+ +Q+ KE+ + E K ++ T +E + + + ++ +
Sbjct: 727 KAPAN--SNASEKLEQLEKELLESRENEKKSSAAVTRLEGLEKNLSSIREELATKEKDMA 784
Query: 433 ATITSI 450
+T+ +
Sbjct: 785 STVQQL 790
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 109 PVKMAEEGDEKASGDVEEDTKTVTPQPEPKIP--DVELIVDGFGLMPKSMKVPKNRTSNA 282
P++ AE DE+ VEE P+ E K P +VE V+ + +VP
Sbjct: 1131 PIEEAEAPDERVESSVEE---AEAPEEEVKAPVEEVEAPVEEAVASVEEAEVPIEEAETQ 1187
Query: 283 FEESKQMLKEIKVTNEEAKSP 345
E+++ +++ + + ++A++P
Sbjct: 1188 AEDTEGPVEDAEASVQKAEAP 1208
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +1
Query: 103 KFPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNA 282
K P++ AE +KA VEE P + +VE K + P
Sbjct: 688 KAPIQEAEASVKKAEATVEE-----IEAPIERAKEVEAQSKEVDAPVKEAEAPAGEAEAP 742
Query: 283 FEESKQMLKEIKVTNEEAKSP 345
EES+ ++++ + + EEA+ P
Sbjct: 743 VEESEVLVEKAEASVEEAEVP 763
>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
Length = 1219
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 97 NSKFPVKMAEEGDEKASG-DVEEDTKTVTPQPEPKIPDV 210
N+ P E ++ SG DV + K+ PQPE IP+V
Sbjct: 304 NTDVPEATKPENKQQTSGIDVAKSRKSEVPQPEVSIPEV 342
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +1
Query: 115 KMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEES 294
KM +E +EK D++ DT+ E KI D+E ++ L + K A E
Sbjct: 913 KMRKETEEKFKTDLQ-DTELKLKDAEAKIKDLETQLEQAKLHAEQFKSMSGANDEALREV 971
Query: 295 KQMLKEIKVTNE 330
+ +E K E
Sbjct: 972 NKSTEEFKSNME 983
>SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -2
Query: 377 LTTSMLVLEEQGLLASS-FVTFISFNICFDSSKAFEVRFLGTFIDLG--INPNPSTINST 207
+TT LV+ L+ ++ + +FNIC+D++ F+ TF D N N T N
Sbjct: 22 MTTPTLVMTTPSLVMTTPSLVMTTFNICYDNANTFDDN-SNTFNDNSNTFNDNSITFNDN 80
Query: 206 S 204
S
Sbjct: 81 S 81
>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
Length = 479
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 124 EEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVD 225
EE +E+ +V+ + T P P+P P+ + +VD
Sbjct: 356 EEEEEEEEEEVDREAVTPPPPPQPPPPNEQQVVD 389
>SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 97 NSKFPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVE 213
+SK P E + G+ E + + V EPK PD E
Sbjct: 279 SSKAPETQVSESMQMTQGEAEAEPQRVAEIKEPKTPDFE 317
>SB_37594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 252 EGTQKPHLKCLRRIKANVKRNKSYE*RSQKSLLLQY 359
+G K HLKC R K +K++ Y+ R QK + Q+
Sbjct: 38 KGPIKQHLKCDREQKGPIKQHLKYD-REQKGPIKQH 72
>SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +1
Query: 244 KSMKVPKNRTSNAFEESKQMLKEIKVTNEEAKSPCSSSTNIEVVRRYTWRTKNRMS 411
K MK +FEE+KQ LKE K + E +++ S E RR + TK R S
Sbjct: 206 KEMKQSFEEAKQSFEEAKQSLKEAKQSFEGSETKRRRS---ETKRRRS-ETKRRRS 257
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 241 PKSMKVPKNRTSNAFEESKQMLKEIKVTNEEAKSPCSSS 357
P ++ ++ +S+A ++++ KE++ TN+ KS SSS
Sbjct: 934 PGTLSAGQDYSSSASNDTEKGAKEVERTNDSVKSKTSSS 972
>SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23)
Length = 880
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +1
Query: 169 KTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEESKQMLKEIKVTNEEAKSPC 348
KT+ P+PEP+ +L D F + +++ K+ + F + M+KE+ + E A C
Sbjct: 811 KTLIPEPEPEPVPQDLANDSFRTICENIH-RKSYSHGHF--ASMMVKELYPSEERAGRNC 867
Query: 349 SSS 357
S +
Sbjct: 868 SGT 870
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,195,015
Number of Sequences: 59808
Number of extensions: 306203
Number of successful extensions: 862
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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