Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e12
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.66 
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.87 
SB_18639| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.5  
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   28   2.0  
SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)          27   2.6  
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)            27   3.5  
SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.5  
SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42)             27   3.5  
SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 26   6.1  
SB_1433| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.1  
SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               26   8.1  
SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11)                26   8.1  
SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)              26   8.1  

>SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1756

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 55   KLSAFYKTCDKPWSYANMTAEAPLCCENSQVKVCSSVVTLKSTVQPEAKT 204
            K    Y TC   + + N+T  A       QV +CS+  +L+  +Q +  T
Sbjct: 1197 KRHVVYITCRNEFGFNNITTYAKTIDFGCQVNICSASASLEGEIQRQRNT 1246


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 99  RKHDCRSPTLLRKFPSESLFVGGNTKINSATGSKDYHII 215
           +K   RSP L RK   ESL V G+      TG  D H+I
Sbjct: 92  KKLSDRSPALARKQNKESLKVIGDHATGLCTGHDDDHLI 130


>SB_18639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 254 IDFHLFVKITLLINY--MVVFASGCTVDFSVTTDEQ 153
           IDFH FVK+  +IN    V F S  +++  V  D Q
Sbjct: 3   IDFHKFVKVGHIINMNGFVTFTSSRSMEIEVILDAQ 38


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 127 CCENSQVKVCSSVVTLKSTVQPEAKTT 207
           CC+N    VC   VT ++T  P +K T
Sbjct: 161 CCDNGCTSVCVPPVTQQTTALPTSKRT 187


>SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)
          Length = 405

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 105 HDCRSPTLLRKFPSESLFVGGNTKINSATGSKDYH 209
           HD R+ T L  FP    + G  T  ++ATG+K  H
Sbjct: 359 HDIRN-TCLISFPLSYSYAGRATSASTATGNKHQH 392


>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
          Length = 1232

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 318 VMFEISNSVIN-ANTVRFIYNFYRLSFIRKNNSVNKLYGSLCF 193
           + FE+  ++     T R +YNF R  +   N S+  +   LCF
Sbjct: 522 ISFELDLNISKKTKTKRVVYNFKRADWTGLNESLKNIPWDLCF 564


>SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 318 VMFEISNSVIN-ANTVRFIYNFYRLSFIRKNNSVNKLYGSLCF 193
           + FE+  ++     T R +YNF R  +   N S+  +   LCF
Sbjct: 64  ISFELDLNISKKTKTKRVVYNFKRADWTGLNESLKNIPWDLCF 106


>SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42)
          Length = 715

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 318 VMFEISNSVIN-ANTVRFIYNFYRLSFIRKNNSVNKLYGSLCF 193
           + FE+  ++     T R +YNF R  +   N S+  +   LCF
Sbjct: 209 ISFELDLNISKKTKTKRVVYNFKRADWTGLNESLKNIPWDLCF 251


>SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 822

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 318 VMFEISNSVIN-ANTVRFIYNFYRLSFIRKNNSVNKLYGSLCF 193
           + FE+  ++     T R +YNF R  +   N S+  +   LCF
Sbjct: 202 ISFELDLNISKKTKTKRVVYNFKRADWTGLNESLKNIPWDLCF 244


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 254 IDFHLFVKITLLINYMVVFAS 192
           +DF LF  I LLINY+ V AS
Sbjct: 732 VDFKLFDIICLLINYISVSAS 752


>SB_1433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 309 EISNSVINANTVRFIYNFYRLSFIRKNNSVNKLYGSLCFR 190
           ++S +   AN+V  ++N Y++S    NN + KL GSL  R
Sbjct: 696 QLSEAYDQANSVVDLHN-YQVSDYIINNELRKLCGSLSLR 734


>SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1328

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 23  SAAGLKMSTNLSFQLFTKRATNHGVTQT*LPKPH 124
           SA+ L   +NLS +LFT   T    + T L + H
Sbjct: 724 SASNLSNKSNLSMRLFTPNITPRKASDTSLRRTH 757


>SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11)
          Length = 877

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 318 VMFEISNSVIN-ANTVRFIYNFYRLSFIRKNNSVNKLYGSLCF 193
           + FE+  ++     T R +YN+ R  +   N S+  +   LCF
Sbjct: 750 ISFELDLNISKKTKTKRVVYNYKRADWTGLNESLKNIPWDLCF 792


>SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)
          Length = 281

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 139 NFRSKVGLRQSCLRNSMVCRTFCKK 65
           + R++ GL + C+R ++ C   C K
Sbjct: 85  HLRNRAGLEKFCIRTALCCYFVCSK 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,539,792
Number of Sequences: 59808
Number of extensions: 146651
Number of successful extensions: 339
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)