Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e11
         (153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   1.8  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    23   4.1  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      23   7.2  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    22   9.5  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    22   9.5  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 45  FSFILKQKSINYLLHSXSTKSILFYGCSXSN 137
           F F +K KS++Y+L + +   +L +G   +N
Sbjct: 357 FCFQIKTKSVSYILQAETHMEMLEWGSVINN 387


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 44  FFIYPKAKEY*LFITLXF 97
           FF+YP  +E+ LF+   F
Sbjct: 357 FFVYPLVQEFCLFLACSF 374


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 96  STKSILFYGCSXSNPHVCG 152
           STK +L+ G S  + H CG
Sbjct: 244 STKPVLYRGNSEKSCHSCG 262


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 63  QKSINYLLHSXSTKS 107
           +KS+NYLL   S+K+
Sbjct: 67  EKSVNYLLQKASSKA 81


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 63  QKSINYLLHSXSTKSILFY 119
           +K IN +LHS S  S  FY
Sbjct: 42  RKIINEMLHSHSELSSFFY 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,725
Number of Sequences: 5004
Number of extensions: 4940
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)