Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e08
         (180 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)                    25   7.5  

>SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)
          Length = 348

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 171 MGRSKNRRVLHTYSYR---DRSKG*YLKVSKFSLQR 73
           MG+ KNR V    SYR    +SK   +KV K ++ R
Sbjct: 1   MGKGKNRSVYRHSSYRTLPTKSKSLRMKVGKSNIPR 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,363
Number of Sequences: 59808
Number of extensions: 33398
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 16,821,457
effective HSP length: 38
effective length of database: 14,548,753
effective search space used: 305523813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)