Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e07
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_41643| Best HMM Match : uDENN (HMM E-Value=3.5)                     31   0.78 
SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  

>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 26/105 (24%), Positives = 41/105 (39%)
 Frame = +2

Query: 134 PLMPCNAPHFAPPSSNLPHNIIGEGDVVAIVSSGGVLQYFFTPVTHGIHCPTNAPYGLPY 313
           P + C A   +      P    G   VV  V+    +Q  + P  H  H P   P    +
Sbjct: 103 PPVTCQAQQGSTAQQVTPQGQQGYSGVVMPVAINQPIQQVYQP-NHPQHIPPQNPVAT-H 160

Query: 314 WNANKPLWFVRSIGDPFHIQPYPNSPEGVIFNRYNIISDSQPVQP 448
           W   +PL    ++G P+  Q  P  P+ V+    ++    +PV P
Sbjct: 161 WQQQQPLPVPGAVGSPYIHQ--PRHPQHVLVRSQSL--PEEPVPP 201


>SB_41643| Best HMM Match : uDENN (HMM E-Value=3.5)
          Length = 426

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 243 FSISSHQSPTVYTVQPTHLMGYLIGMQ 323
           ++ S+HQ+PT     P H++G+L G++
Sbjct: 157 YTASAHQAPTFSVTLPNHILGWLTGIK 183


>SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 338 FVRSIGDPFHIQPYPNSPEGVIFNRYNIISDSQPVQPFDLKFHN 469
           F ++   P   +P P+SP  V   + N I D+ P    D  F+N
Sbjct: 198 FSKTFLGPTPTKPTPSSPSEVFITKNNNIPDAAPTTKSDTDFNN 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,100,589
Number of Sequences: 59808
Number of extensions: 481058
Number of successful extensions: 1032
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)