Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e06
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    30   0.25 
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    29   0.34 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   1.4  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   3.1  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.2  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   9.5  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   9.5  

>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 191 EIQRQNDRDLRKAGRDLERDKANLEREEKKLLKPGPAGVATV 316
           E Q Q+D ++ K  +  +++    ++ ++K +KPGP G A V
Sbjct: 425 EEQSQSDYEIDKKKKKKKKNNKKKKKNKRKNIKPGPLGPAYV 466


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 119 SKKIPKLYTKETMM-NFFSKAPTVKEIQRQNDRDLRKAGRDLERDKANLER 268
           +KK+     KE +  N F +A    +++ +NDR + + G+ L+R    LE+
Sbjct: 287 NKKLKDKIKKEMLTANLFGEADQDVDLEEENDRQMSREGKKLQRYLKLLEK 337


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 467 LNTIKHSLISHKYYREFQRF*TIRFFHKESY 375
           LN  K S ISH++YR  +RF  I     ESY
Sbjct: 546 LNFGKISFISHEFYRVSKRFLDILLIWFESY 576


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +2

Query: 146 KETMMNFFSKAPTVKEIQRQNDRDLR---KAGRDLERDKANLEREEKKLLK 289
           K+ + N  ++A   K++Q+Q  ++ R   K    L+R+K   +RE++K L+
Sbjct: 64  KKRIYNGSAEAGKEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLR 114


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +2

Query: 68  YFTLCTFLFKFHFRNKISKKIPKLYTKETMMNFFSKAPTVKEIQRQNDRDLRKAGRDLER 247
           YF + + L   + ++ ++++  K YT++ M     +    KE++R+   D+    +D  R
Sbjct: 266 YFDINSSLNSHNGQSLLAERRNKRYTRKEMEQMKRRTKEKKEMKRRALYDIASDEKDFRR 325

Query: 248 DK 253
            K
Sbjct: 326 RK 327


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 214 TVILPLNFLHGWSFTKKIHHSF 149
           TV+LPL F H W+   KI  ++
Sbjct: 103 TVLLPLIFKHVWNLNFKIGDTY 124


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 188 KEIQRQNDRDLRKAGRDLERDKANLEREEKKLLKPGPAGVAT 313
           +++    D D      D++   A++ERE  +L    P+ V T
Sbjct: 412 QQVDEDEDEDYEPPEVDVQTINASVEREAARLEGSAPSNVVT 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,307
Number of Sequences: 5004
Number of extensions: 32371
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)