Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e03
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    67   2e-12
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    31   0.11 
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    29   0.45 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   1.4  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   2.4  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    27   3.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   4.2  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   4.2  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   4.2  
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    26   4.2  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   5.5  
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    25   9.6  

>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
 Frame = +2

Query: 224 YKIFISVYLDRIRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRV 403
           YKI  S + ++   D  S+I  TYR G    G E +TSD GWGCM+R  Q +L   L   
Sbjct: 33  YKIEDSQWPEKFLYDSFSLITITYRSGIE--GLENMTSDTGWGCMIRSTQTLLANCL--- 87

Query: 404 HLSVDWVWSPETRDPTYLKIIQRFEERKQAPYSIHQVALMGASE-GKEVGQWFGPNTIAQ 580
                 +  PE +     +I+  F +   AP+SIHQ   MG +      GQWFGP T   
Sbjct: 88  -----RICYPEKQ---LKEILALFADEPSAPFSIHQFVTMGKTLCDINPGQWFGPTTSCS 139

Query: 581 VLKKLTVYDKWSSLAIHVALDNTVV 655
            + +L+  +    L ++VA +   +
Sbjct: 140 CVARLSDQNPDVPLHVYVARNGNAI 164


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +3

Query: 159 FYTKLTNFCLHYGKECEMMH-FFIRSLYLSIWIVLEEISHQ*YGVRTEKALYQLVMKV*L 335
           F+ KL N  L   +     H FF+ +L+ ++W  + EIS              L  K  L
Sbjct: 269 FFPKLKNVWLPLLQSIASKHSFFLPALFTTLWSEILEISQ----TVDSLVFLDLKEKEEL 324

Query: 336 LIKDGAVCYDVDRWY*VLLLSEYT 407
             K+ A CY + +WY  L+   YT
Sbjct: 325 TDKESAGCY-LAKWYAYLMREAYT 347


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
 Frame = -2

Query: 318  PIGTKPFLYVHHIIDVISLLIRSK*TDIKIL*KSASFHIPFHSVNKN*LILCKNTI*LH- 142
            P+     L   +  ++ S L R    +I  + KS   HIP HS+ KN      N + +H 
Sbjct: 721  PVSAPGNLDFDNSAELCSSLTRFTPKNIDFVLKSL-IHIPIHSITKNQRTRLLNLLIIHE 779

Query: 141  -------TTATITMH-----INCTKCNMGIY*NNKIYLD----KKHDMNWNKIHI 25
                    +A I++      +  T C+ G Y + KI +D     K D++++K+H+
Sbjct: 780  KLLSDKDNSAHISLRKIIYTLMKTPCSSGFYRDPKIIIDLMQFGKTDLSFHKVHV 834


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 447 GSLVSGDHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVKPSSP 316
           GSL S   + +      + A P T+   RN  P+P +  +P+ P
Sbjct: 325 GSLHSKSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPP 368


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 407 SVL*QEQHLIPSVHIVTYSPILYQKSNLHHQLVQ 306
           +VL ++   +P +  +T SP   +K NL+H+L Q
Sbjct: 169 AVLSKKHFTLPRIFGMTASPFTGKKGNLYHRLYQ 202


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 547 NFFSFRGTHQCHLMDRIRCLFPFFKPLYDL 458
           NFF  RG H+C  ++RI   +   K  Y++
Sbjct: 116 NFFILRGNHECASINRIYGFYDECKRRYNI 145


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 257  IRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVL 382
            IR  +TSI +   RK FV   DE L + +  GC++     +L
Sbjct: 1317 IRNRLTSIRFIVNRKFFVCFKDETLPNVEIEGCLIEKSNAIL 1358


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 119 CIVIVAVVCNYIVFLHKI 172
           C+  +  VCN++ FLH+I
Sbjct: 473 CVARLRSVCNFVAFLHQI 490


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 119 CIVIVAVVCNYIVFLHKIN 175
           CI +    CN ++FLH++N
Sbjct: 451 CIEVYLSYCNTLIFLHRLN 469


>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 162 YTKLTNFCLHY 194
           Y KL NFCLHY
Sbjct: 106 YQKLVNFCLHY 116


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 395 QEQHLIPSVHIVTYSPILYQKSN 327
           Q+QH IP ++   YSP+L   S+
Sbjct: 340 QQQHRIPKLNASNYSPLLSPSSH 362


>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 434 ETRDPTYLKIIQRFEERKQAPYSIHQVALMGASEGKEVGQWFGPNTIAQVLK 589
           E  D T+ K+I      +    S+H+ ALMG        QWF   T  + +K
Sbjct: 3   ENTDSTHEKLIFAPSRYQYEKSSLHRDALMGKDPLVLFNQWFQEATDDEGIK 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,572
Number of Sequences: 5004
Number of extensions: 65308
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)