Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e03
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958...    87   1e-17
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522...    85   6e-17
09_04_0363 + 16957949-16958361,16958524-16958527                       29   4.3  
11_03_0126 + 10371536-10371596,10372467-10372544,10373968-103741...    28   5.7  
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252...    27   9.9  

>03_03_0216 +
           15495395-15495566,15495648-15495733,15495824-15495874,
           15496005-15496390,15496760-15496898,15497540-15497595,
           15497712-15497782,15497876-15498081
          Length = 388

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
 Frame = +2

Query: 266 DITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVHLSVDW-VWSPETR 442
           D +S IW TYRKGF  I D   TSD  WGCM+R  QM++  AL+  HL   W   S +  
Sbjct: 46  DFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRKPSQKPY 105

Query: 443 DPTYLKIIQRFEERKQAPYSIHQVALMGASEGKEVGQWFGPNTIAQVLKKL 595
            P Y+ I+  F + +   +SIH +   G S G   G W GP  + +  + L
Sbjct: 106 SPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLAAGSWVGPYAMCRAWQTL 156


>04_04_1624 -
           34849385-34849410,34849748-34851052,34852121-34852294,
           34852386-34852456,34852563-34852618,34853047-34853185,
           34853310-34853695,34853801-34853851,34853936-34854021,
           34854112-34854553,34856241-34856315,34856457-34856593,
           34856679-34856838,34856917-34857012,34857093-34857247,
           34857900-34858032
          Length = 1163

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
 Frame = +2

Query: 266 DITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVHLSVDWVWSPE-TR 442
           D +S IW TYR+GF  I D   TSD  WGCM+R  QM++  AL+  HL   W    E   
Sbjct: 388 DFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRRPLEKPY 447

Query: 443 DPTYLKIIQRFEERKQAPYSIHQVALMGASEGKEVGQWFGPNTIAQVLKKL 595
           +P Y+ I+  F + +   +SIH +   G S G   G W GP  + +  + L
Sbjct: 448 NPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLAAGSWVGPYAMCRAWQTL 498


>09_04_0363 + 16957949-16958361,16958524-16958527
          Length = 138

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 429 DHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVK 328
           DH ++T   T T +TPN I P       P S +K
Sbjct: 85  DHLKATSPATATASTPNIIVPMTPAATAPTSSLK 118


>11_03_0126 +
           10371536-10371596,10372467-10372544,10373968-10374127,
           10374286-10374610,10374708-10374860,10374985-10375236,
           10375356-10375445,10375543-10375621,10375712-10375818,
           10375921-10376048,10376329-10376419
          Length = 507

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 233 FISVYLDRIRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVHLS 412
           F +  ++ I R IT++I   +RK    +   G T   GW  M+    + L   L    L 
Sbjct: 370 FSTQVVNEINR-ITTVIPGGFRKALTDVQVNGYTIPSGWLVMISPMGVHLNPKLFEDPLK 428

Query: 413 VD-WVWSPETR 442
            D W W+ E R
Sbjct: 429 FDPWRWTEEKR 439


>03_05_0650 -
           26423829-26424179,26424379-26424612,26424961-26425236,
           26425372-26425648,26425751-26425764,26425843-26425989,
           26426306-26426366,26426570-26426604,26426688-26426882,
           26428230-26428439,26428865-26428940,26429519-26429799
          Length = 718

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 41  QFISCFLSKYILLF*YIPILHLVQLMCIVIVAVVC 145
           QF++ + +KY     Y PI H   +  IV+  ++C
Sbjct: 524 QFLNVYCTKYDTGGLYWPIAHYTTIFSIVLTQIIC 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,355,727
Number of Sequences: 37544
Number of extensions: 363773
Number of successful extensions: 790
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)