Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8e03
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)        104   6e-23
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)               29   2.5  
SB_58459| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)                  28   5.8  

>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
          Length = 878

 Score =  104 bits (250), Expect = 6e-23
 Identities = 44/67 (65%), Positives = 56/67 (83%)
 Frame = +2

Query: 455 LKIIQRFEERKQAPYSIHQVALMGASEGKEVGQWFGPNTIAQVLKKLTVYDKWSSLAIHV 634
           LKI++ F ++K + YSIHQ+A MG SEGK VG WFGPNT+AQVLKKL+ +D WSSL +HV
Sbjct: 87  LKILEAFLDKKDSLYSIHQIAQMGVSEGKAVGSWFGPNTVAQVLKKLSAFDDWSSLCLHV 146

Query: 635 ALDNTVV 655
           A+DNTV+
Sbjct: 147 AMDNTVI 153


>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
          Length = 936

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 414  TDKCTLTRATPNTICPHRNIQPHPLSEVKPSSPIGTKPFLYV 289
            T   TL    PN++C     +P+ L   KP S   T P LYV
Sbjct: 897  TQSPTLCHTKPNSLC---YTKPNSLCHTKPDSLCHTNPVLYV 935


>SB_58459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 372 CPHRNIQPH--PLSEVKPSSPIGTKPFLYVHHIIDVIS 265
           CPHR   PH  PLS +   +   T+   Y HH I +I+
Sbjct: 12  CPHRRSSPHRLPLSRINVGTHADTE---YPHHNIGIIA 46


>SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)
          Length = 336

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 495 GACFLSSNLCMIFK*VGSLVSGDHTQSTDKCTLT 394
           G C LS+++C ++  V +L +G  T S   CTL+
Sbjct: 114 GVCTLSASVCTLYAGVCTLSAGVCTLSAGVCTLS 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,143,043
Number of Sequences: 59808
Number of extensions: 463472
Number of successful extensions: 1058
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)