Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d24
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210...    29   3.6  
12_02_0997 - 25121029-25121126,25121365-25121405,25121565-251218...    28   4.7  

>04_04_1156 -
           31319747-31320085,31320556-31320706,31320795-31321026,
           31321121-31321331,31321646-31321764,31321835-31322032,
           31322163-31322364,31322456-31322832,31322937-31323007,
           31326264-31326329,31326414-31326479,31326761-31326835,
           31326944-31327018,31327115-31327186,31327683-31327904,
           31328012-31328083,31328425-31328496,31329410-31329481,
           31329716-31329896,31332132-31332237
          Length = 992

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -2

Query: 571 STTLSLNLFLIRNVILGSSLLAIKFSALSTFSLSM*NTSVLL--LPS*LGNS 422
           S+  SLN  ++RN ++ +SL +I FS  ++ +L     + L   LP+ +G S
Sbjct: 283 SSMTSLNTLILRNCMISNSLESIDFSKYASLTLLFLGNNSLTGKLPTSIGRS 334


>12_02_0997 -
           25121029-25121126,25121365-25121405,25121565-25121805,
           25121884-25121946,25122719-25122852,25122904-25123006,
           25123079-25123281,25123382-25123468,25123886-25124014,
           25124241-25124315,25124731-25124816,25124926-25125162
          Length = 498

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 441 GSSRTLVFYIDSENVDNALNLIANSEDPNITFLIRNKLSDKVVDA 575
           GS  +  FY+DS+ +   ++ +A+  D  +  + R   SDK V A
Sbjct: 62  GSGGSSPFYVDSDGLQRQIDELASFSDSPVPSVTRVLYSDKDVQA 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,801
Number of Sequences: 37544
Number of extensions: 176840
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)