Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d24
         (581 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ066624-1|AAY83339.1|  265|Drosophila melanogaster HDC10856 pro...    30   2.0  
AY928610-1|AAX28843.1|  377|Drosophila melanogaster gag protein ...    30   2.0  
AJ001516-2|CAC79667.1|  373|Drosophila melanogaster gag protein ...    30   2.0  
AJ000387-2|CAA04049.1|  343|Drosophila melanogaster Gag protein ...    29   3.5  
BT023961-1|ABB36465.1| 1780|Drosophila melanogaster AT09811p pro...    28   8.0  
AY069794-1|AAL39939.1|  874|Drosophila melanogaster SD03524p pro...    28   8.0  
AE014296-2351|AAF49765.1| 1780|Drosophila melanogaster CG6451-PA...    28   8.0  

>DQ066624-1|AAY83339.1|  265|Drosophila melanogaster HDC10856
           protein.
          Length = 265

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +3

Query: 408 STFSKLLPSYDGSSRTLVFYIDSENVDNALNLIANSEDPNITFLIRNKLSDKVVDALS 581
           +T SKL+P +DG +  L  +ID+ N+   ++ I    +     +I+ KL     + +S
Sbjct: 10  NTASKLIPDFDGKAENLTSFIDALNI---VDTIKGEHESLAVSVIKTKLKGHARNLIS 64


>AY928610-1|AAX28843.1|  377|Drosophila melanogaster gag protein
           protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 402 DYSTFSKLLPSYDGSSRTLVFYIDSENVDNALNLIANSEDPNITFL----IRNKLSDKVV 569
           D   F + LP++DG+ R L  +I S  V+  L LI  ++      L    IRNK+ D+  
Sbjct: 86  DIMAFVEHLPTFDGTPRLLDRFITS--VEEILMLIRGADQTPYGLLTLRTIRNKIIDRAD 143

Query: 570 DAL 578
           +AL
Sbjct: 144 EAL 146


>AJ001516-2|CAC79667.1|  373|Drosophila melanogaster gag protein
           protein.
          Length = 373

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 402 DYSTFSKLLPSYDGSSRTLVFYIDSENVDNALNLIANSEDPNITFL----IRNKLSDKVV 569
           D   F + LP++DG+ R L  +I S  V+  L LI  ++      L    IRNK+ D+  
Sbjct: 86  DIMAFVEHLPTFDGTPRLLDRFITS--VEEILMLIRGADQTPYGLLTLRTIRNKIIDRAD 143

Query: 570 DAL 578
           +AL
Sbjct: 144 EAL 146


>AJ000387-2|CAA04049.1|  343|Drosophila melanogaster Gag protein
           protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = +3

Query: 396 STDYSTFSKLLPSYDGSSRTLVFYIDSENVDNALNLIANSEDPNITFL----IRNKLSDK 563
           +TD   F K LP++DG+   L  YI S  V+  + LI  ++      L    IRNK+  +
Sbjct: 82  ATDILAFVKELPTFDGTPGQLDKYITS--VEEIIMLIRGTDQTPYGLLTLRAIRNKIVGR 139

Query: 564 VVDALS 581
             +AL+
Sbjct: 140 ADEALN 145


>BT023961-1|ABB36465.1| 1780|Drosophila melanogaster AT09811p protein.
          Length = 1780

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 468  IDSENVDNALNLIANSEDPNITF 536
            I  E V+N+LN++ NSE+ NI F
Sbjct: 972  ITLERVENSLNILLNSENVNIHF 994


>AY069794-1|AAL39939.1|  874|Drosophila melanogaster SD03524p
           protein.
          Length = 874

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 468 IDSENVDNALNLIANSEDPNITF 536
           I  E V+N+LN++ NSE+ NI F
Sbjct: 66  ITLERVENSLNILLNSENVNIHF 88


>AE014296-2351|AAF49765.1| 1780|Drosophila melanogaster CG6451-PA
            protein.
          Length = 1780

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 468  IDSENVDNALNLIANSEDPNITF 536
            I  E V+N+LN++ NSE+ NI F
Sbjct: 972  ITLERVENSLNILLNSENVNIHF 994


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,362,232
Number of Sequences: 53049
Number of extensions: 314021
Number of successful extensions: 518
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)