Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d24
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82264-12|CAB05161.2|  300|Caenorhabditis elegans Hypothetical p...    28   4.2  
Z99281-26|CAE18029.1|  377|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z50006-1|CAA90301.1|  190|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z82264-12|CAB05161.2|  300|Caenorhabditis elegans Hypothetical
          protein C49C3.8 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 96 DFLIAPVIMRGNEPALKKTTKLTFSAEDD 10
          DFL +  I++   P +KK +KL+FS EDD
Sbjct: 3  DFL-SEQILQLTTPTMKKKSKLSFSPEDD 30


>Z99281-26|CAE18029.1|  377|Caenorhabditis elegans Hypothetical
           protein Y57G11C.46 protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 235 SWGKHIILLIPEIFYHSP*FSLFFICTHC 321
           SW    + L+  I YH   FS   +CTHC
Sbjct: 170 SWSTVTVSLVFSICYHWSDFSKNRVCTHC 198


>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +3

Query: 411 TFSKLLPSYDGSSRTLVFYID--SENVDNALNLIAN-SEDPNITFLIR 545
           ++SKLL +YDG+    V+ +   +E  D  L  +AN  E+ +I F+ R
Sbjct: 63  SYSKLLDNYDGAKHAKVWRLHNVTEAYDTKLGTLANVMENSHIGFIDR 110


>Z50006-1|CAA90301.1|  190|Caenorhabditis elegans Hypothetical
           protein T07C5.1b protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +3

Query: 411 TFSKLLPSYDGSSRTLVFYID--SENVDNALNLIAN-SEDPNITFLIR 545
           ++SKLL +YDG+    V+ +   +E  D  L  +AN  E+ +I F+ R
Sbjct: 63  SYSKLLDNYDGAKHAKVWRLHNVTEAYDTKLGTLANVMENSHIGFIDR 110


>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
           protein F43C1.1 protein.
          Length = 1036

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 408 STFSKLLPSYDGSSRTLVFYIDSEN---VDNALNLIANSEDPNITFLIRNKLSDKVVDAL 578
           S F +LLP +DGSS   +  +   N    +N++ +I N +   I  L  N+L+     AL
Sbjct: 495 SNFIELLPYFDGSSFCRLQILRCANNYLTENSVPVIVNMKHLKIIDLSHNRLNSFDDSAL 554

Query: 579 S 581
           S
Sbjct: 555 S 555


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,334,013
Number of Sequences: 27780
Number of extensions: 177544
Number of successful extensions: 442
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)