Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8d22
(572 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein pr... 29 0.037
AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembran... 25 0.35
AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembran... 25 0.35
AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor ... 21 5.6
AY490815-1|AAR82970.1| 136|Tribolium castaneum glass protein pr... 21 7.5
AM292364-1|CAL23176.2| 353|Tribolium castaneum gustatory recept... 21 7.5
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.9
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.9
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.9
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.9
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.9
>AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein
protein.
Length = 392
Score = 28.7 bits (61), Expect = 0.037
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 368 KNNRKPNYCEMDWHNYHRLHVIYAFMENLSHEYPYLC 478
++N+KPN C + +Y R + + S E PY C
Sbjct: 244 EDNQKPNVCRICGKSYARPSTLKTHLRTHSGEKPYRC 280
Score = 21.0 bits (42), Expect = 7.5
Identities = 13/60 (21%), Positives = 23/60 (38%)
Frame = +2
Query: 371 NNRKPNYCEMDWHNYHRLHVIYAFMENLSHEYPYLCSVAVIGKSAEGRDIKILKVSNGNE 550
+ KP C + + + + M S E PY C + S K L++ +G +
Sbjct: 301 SGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 360
>AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembrane
transporter protein.
Length = 669
Score = 25.4 bits (53), Expect = 0.35
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 369 FEYLIPCSLLSTDPTSPIAIEYGISLS*SIPAICVILGPSTIISIVLFSSF 217
F + I C ++ I+ Y IS ++ + +GP +I +LF F
Sbjct: 524 FRFYIACGIMILVANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGF 574
>AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembrane
transporter white protein.
Length = 669
Score = 25.4 bits (53), Expect = 0.35
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 369 FEYLIPCSLLSTDPTSPIAIEYGISLS*SIPAICVILGPSTIISIVLFSSF 217
F + I C ++ I+ Y IS ++ + +GP +I +LF F
Sbjct: 524 FRFYIACGIMILVANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGF 574
>AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor
protein protein.
Length = 585
Score = 21.4 bits (43), Expect = 5.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -2
Query: 277 GYLCDSRSIHHYIHCAIFFFPDCYRSMC 194
GY+CD S + +C I +C + C
Sbjct: 398 GYICDCPSGTNGTNCEIDTINECDSNPC 425
>AY490815-1|AAR82970.1| 136|Tribolium castaneum glass protein
protein.
Length = 136
Score = 21.0 bits (42), Expect = 7.5
Identities = 13/60 (21%), Positives = 23/60 (38%)
Frame = +2
Query: 371 NNRKPNYCEMDWHNYHRLHVIYAFMENLSHEYPYLCSVAVIGKSAEGRDIKILKVSNGNE 550
+ KP C + + + + M S E PY C + S K L++ +G +
Sbjct: 45 SGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 104
>AM292364-1|CAL23176.2| 353|Tribolium castaneum gustatory receptor
candidate 43 protein.
Length = 353
Score = 21.0 bits (42), Expect = 7.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 454 QILHERVNYMKTMIVMPIHFTIVWFSVI 371
QIL++ VN+ + PI F +++F+ +
Sbjct: 205 QILNQTVNFYNSAFGWPIAF-LIFFATL 231
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 20.6 bits (41), Expect = 9.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 372 FFEYLIPCSLLST 334
FF ++PC L+S+
Sbjct: 215 FFNLIVPCVLISS 227
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 20.6 bits (41), Expect = 9.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 372 FFEYLIPCSLLST 334
FF ++PC L+S+
Sbjct: 215 FFNLIVPCVLISS 227
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 20.6 bits (41), Expect = 9.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 372 FFEYLIPCSLLST 334
FF ++PC L+S+
Sbjct: 215 FFNLIVPCVLISS 227
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 20.6 bits (41), Expect = 9.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 372 FFEYLIPCSLLST 334
FF ++PC L+S+
Sbjct: 215 FFNLIVPCVLISS 227
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 20.6 bits (41), Expect = 9.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 372 FFEYLIPCSLLST 334
FF ++PC L+S+
Sbjct: 215 FFNLIVPCVLISS 227
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,287
Number of Sequences: 336
Number of extensions: 3098
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -