Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8d20
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 28 0.85
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 27 1.5
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 2.0
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.6
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 26 3.4
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 26 3.4
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 4.5
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 4.5
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 26 4.5
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 6.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.0
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 25 7.9
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 25 7.9
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 28.3 bits (60), Expect = 0.85
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Frame = +3
Query: 222 SDLLN-LES----SAKLLEPDKVNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPK 386
SDLLN L+S S KLLEP+ N T+ + +I E ++PK
Sbjct: 2 SDLLNYLQSIAATSEKLLEPENPNAARFTDAVLHTHAITDLIRDTQKEELIAAEFKSLPK 61
Query: 387 DYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIYTRSLRH 536
D+ L +EN A + I+ L + +E L+T+ + H
Sbjct: 62 DWSERL------ASENPADYVACIEELLDIYPMQGGREYLETLVEKYNLH 105
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 180 KSPCLIVKIVSTFESDLLNLESSAKLLEPDKVNEYLDTNTDCRLNNNN 323
+ P L +K VS+ ES+ ESS ++ E + +L+ T + N NN
Sbjct: 78 EEPVLKIKSVSSTESEE-EKESSTEIGEKQEKETHLEPKTPVQTNTNN 124
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 222 SDLLNLESSAKLLEPDKVNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDYINP 401
+D+ ++ + KL +N+Y+ + D R + R+I QN S HI +P D
Sbjct: 568 ADVFYIDDNIKLSL--NLNDYVVVDAD-RGQDLGRLIAQNLSQSEVASHIEKIPSDRNGQ 624
Query: 402 LQ 407
LQ
Sbjct: 625 LQ 626
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 402 LQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIYTRSLRHPYYRGSNYIHEA 572
L + VN + + ++KI+ +T+DL K +IY R PY++ + A
Sbjct: 173 LNICVSTVNLSRTDLKSSLKIILQTIDLFKYDSSFSSIYFRK-DGPYHKVEKLLKSA 228
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 120 SANVHFGKWADGTVDTNKSTKSPCLIVKIVSTFES 224
S + + + AD +T K+ + PC I+K +ST++S
Sbjct: 56 STHPEWAELADRACETMKTLRHPC-IIKYLSTYKS 89
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 3.4
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = +3
Query: 174 STKSPCLIVKIVSTFESDLLNLESSAKLLEPDKVNEYLDTNTDCRLNNNNRIIHQNDSNE 353
ST + + I++T ESD L + K+ ++++ + R + RI N
Sbjct: 369 STNNEGELDDILTTLESDREQLRRHEE--HSQKLLKFIE---EIRNDYEERIHALESQNS 423
Query: 354 FTEKHINNVPKDYINPLQYSLDRVN 428
+ H+ Y+NPL+++ D N
Sbjct: 424 ALKAHLRLAVDAYLNPLEFNFDDKN 448
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 198 VKIVSTFESDLLNLESSAKLLEPDKVNEYLDTNTDCRLNNNNR 326
V +VS ESD N+ + + L + DKVN N + N+ R
Sbjct: 186 VIVVSDSESDDNNVRTKSSLNDHDKVNMKEKRNLELAFMNSKR 228
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 4.5
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +3
Query: 174 STKSPCLIVKIVSTFESDLLNLESSAKLLEPDKVNEYL----DTNTDCRLNNNNRIIHQN 341
STK PC ++++ S F L ++ + + K+ YL DT +C L Q
Sbjct: 334 STKVPCQLIRLPSDFV--LCKMKGKKEHKDAFKIANYLGSPEDTIRECALAAAGECRQQL 391
Query: 342 DSNEFTEKHINNVP-KDYINPLQYSLDR 422
+ + T +I +P D +++ L++
Sbjct: 392 NFQDATYYYIEAIPFSDSAEIIKFYLEK 419
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 441 GHYSHSLYQDCTVRG-*CNLWERY*YVF 361
G + H LY D T +G C W+ + Y F
Sbjct: 149 GMFKHDLYNDLTFQGSSCTAWKPWTYKF 176
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 6.0
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 252 KLLEPDKVNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDYINPLQYSLDRVNE 431
K EP K N+ LD D + +N H N+S T+K D+ L+ S ++ E
Sbjct: 55 KSKEP-KDNKPLDNKNDPKKTHNEDESHTNESLPSTDKKKKKDNDDFKQNLKSSSNKTEE 113
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 435 NARIMENIKILNRTLDLTKSQEILDTIYTRSLRHPYYRGSNYIH 566
NA+I +NIK L +L +++ + D+ + P + N IH
Sbjct: 3923 NAKIPQNIKKLTVSLGSAENESLADSYLKLASTEPLWLFINNIH 3966
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 204 IVSTFESD-LLNLESSAKLLEPDKVNEYLDTNTDCRLNNN 320
I S+ E+D +LNLESS +P + E D ++N N
Sbjct: 177 IPSSAEADTMLNLESSENREQPTSLKEENTQEDDEKVNGN 216
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 261 EPDKVNEYLDTNTDCRLNNNNRI 329
EP KVNE LD + N+N ++
Sbjct: 305 EPSKVNEQLDWRLQVKRNSNMQV 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,401
Number of Sequences: 5004
Number of extensions: 50598
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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