Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d20
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289...    31   0.66 
12_02_1260 - 27395754-27397499                                         31   0.87 
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658...    30   1.1  
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421...    30   1.5  
03_04_0054 + 16883678-16883719,16884667-16884723,16884852-168849...    29   2.0  

>03_01_0372 +
           2895807-2895883,2896557-2896647,2896741-2896839,
           2897220-2897268,2897269-2897405,2898027-2898248,
           2898335-2898488,2898574-2898723,2898890-2898978,
           2899632-2899844,2900180-2900314,2900461-2900640,
           2901004-2901111,2901215-2901340,2901421-2901550,
           2901637-2901729,2902067-2902192,2902294-2902304
          Length = 729

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = +3

Query: 360 EKHINNVPKDYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQE 500
           EK  NN+  + I  L+ SLD   EN  + +ENI   N   D TKS E
Sbjct: 450 EKGKNNILSEQIIHLETSLD---ENKQKQLENISNTNILADTTKSHE 493


>12_02_1260 - 27395754-27397499
          Length = 581

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 187 GDLVLLLVSTVPSAHFPKCTFAECSSS 107
           G LVL L + +PS H P CT +  SSS
Sbjct: 113 GMLVLTLTAAIPSLHPPPCTASSSSSS 139


>11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,
            6581525-6582125,6583981-6585054,6585745-6585873,
            6585925-6585963
          Length = 1471

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 342  DSNEFTEKHINNVPKDYINPLQY-SLDRVNENNARIMENIKILNRTLDLTKSQEILDTIY 518
            + N+F +  +  + KD ++ L+Y SL        + +EN++ L+ TL+L K+  +   I 
Sbjct: 1064 ECNDFDDNRVKGIMKDNLSRLKYLSLGSATTKLPKAIENLQCLH-TLELRKTNVVALPIE 1122

Query: 519  TRSLRH 536
               L H
Sbjct: 1123 VIKLPH 1128


>01_01_0568 -
           4207812-4209587,4210056-4210291,4210647-4210793,
           4211857-4212145
          Length = 815

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
 Frame = +3

Query: 225 DLLNLE----SSAKLLEPDKVNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDY 392
           DLLN E    +SAK    +K++E     TD + ++  R     +S    EK       + 
Sbjct: 406 DLLNEELQALNSAKNEAEEKLSELTKDYTDLKASSEAR--ESRNSELLLEKD------NM 457

Query: 393 INPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIYTRSLR 533
           I  L   L     ++++  ENI  LN+ LD TK+    +    +SLR
Sbjct: 458 IKQLDGKLSDALSDSSKDRENIAALNKELDATKAMLENEVAAVKSLR 504


>03_04_0054 +
           16883678-16883719,16884667-16884723,16884852-16884959,
           16885028-16885102,16885744-16885833,16885950-16886057,
           16886137-16886211,16886371-16886433,16886531-16886924,
           16888539-16888651,16888799-16888829,16888987-16889864
          Length = 677

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/69 (20%), Positives = 31/69 (44%)
 Frame = +3

Query: 270 KVNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDYINPLQYSLDRVNENNARIM 449
           K  E +   ++C L++NN     N+   F +   +  P + +N +  +         +I+
Sbjct: 227 KYEENITKYSECDLDDNNNECANNEKGRFPKNKASLEPSERVNDVPKNFVGAAPTEVQIL 286

Query: 450 ENIKILNRT 476
            N + L++T
Sbjct: 287 SNEQALSKT 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,735,362
Number of Sequences: 37544
Number of extensions: 255057
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)