Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8d20
(577 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK123076-1|BAC85532.1| 392|Homo sapiens protein ( Homo sapiens ... 35 0.24
BC146797-1|AAI46798.1| 754|Homo sapiens nibrin protein. 32 1.3
AY566246-1|AAS59158.1| 754|Homo sapiens Nijmegen breakage syndr... 32 1.3
AK223256-1|BAD96976.1| 754|Homo sapiens nibrin variant protein. 32 1.3
AF069291-2|AAC62232.1| 754|Homo sapiens nibrin protein. 32 1.3
AF058696-1|AAC39752.1| 754|Homo sapiens cell cycle regulatory p... 32 1.3
AF051334-1|AAC39732.1| 754|Homo sapiens nibrin protein. 32 1.3
AB013139-1|BAA28616.1| 754|Homo sapiens NBS1 protein. 32 1.3
AK123797-1|BAC85695.1| 174|Homo sapiens protein ( Homo sapiens ... 30 6.7
AB052103-1|BAB39148.1| 622|Homo sapiens scavenger receptor with... 30 6.7
AB038518-1|BAB39147.1| 742|Homo sapiens scavenger receptor with... 30 6.7
AB034251-1|BAD83592.1| 742|Homo sapiens nurse cell scavenger re... 30 6.7
AB005145-1|BAB72147.1| 742|Homo sapiens collectin placenta 1 pr... 30 6.7
U19178-1|AAA64186.1| 277|Homo sapiens Hin-3 protein. 29 8.9
L38616-1|AAA64231.1| 383|Homo sapiens brain and reproductive or... 29 8.9
BC001251-1|AAH01251.1| 383|Homo sapiens brain and reproductive ... 29 8.9
AY438031-1|AAR30499.1| 383|Homo sapiens BRCA1/BRCA2-containing ... 29 8.9
AK000097-1|BAA90943.1| 415|Homo sapiens protein ( Homo sapiens ... 29 8.9
AF420605-1|AAL17818.1| 379|Homo sapiens BRE alpha a' isoform pr... 29 8.9
AF420603-2|AAL17816.1| 376|Homo sapiens BRE beta b isoform prot... 29 8.9
AF420602-1|AAL17814.1| 376|Homo sapiens BRE alpha b isoform pro... 29 8.9
AF015767-1|AAB69387.1| 383|Homo sapiens brain and reproductive ... 29 8.9
>AK123076-1|BAC85532.1| 392|Homo sapiens protein ( Homo sapiens
cDNA FLJ41081 fis, clone ADRGL2009755, highly similar
to Homo sapiens brain and reproductive organ-expressed
protein (BRE) mRNA. ).
Length = 392
Score = 34.7 bits (76), Expect = 0.24
Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 6/190 (3%)
Frame = +3
Query: 15 MQVYIEMPCTKLIIRKHEESKNCKSLQILIDDDEHSAN--VHFGKWADGTVDTNKSTKSP 188
+Q Y + C++L E S+ Q L+++ ++ N ++ GK + + + +
Sbjct: 65 VQQYHQFQCSRL----RESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWNLASWNPSNPE 120
Query: 189 CLIVKIVSTFESDLLNLESSAKLLEPDKVN-EYLDTNTDCRLNNNNRIIHQNDSN---EF 356
CL++ +V + S +L E ++ EY + + N I +N EF
Sbjct: 121 CLLL-VVKELVQQYHQFQCS-RLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEF 178
Query: 357 TEKHINNVPKDYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIYTRSLRH 536
+ + + +P D+ N Y L VNE+ E++ +L+ + + T++ ++ +Y
Sbjct: 179 SARFLLKLPVDFSNIPTYLLKDVNEDPG---EDVALLSVSFEDTEATQVYPKLYLSPRIE 235
Query: 537 PYYRGSNYIH 566
GS+ +H
Sbjct: 236 HALGGSSALH 245
>BC146797-1|AAI46798.1| 754|Homo sapiens nibrin protein.
Length = 754
Score = 32.3 bits (70), Expect = 1.3
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 237 LESSAKLLEPDK-VNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDYINPLQYS 413
+E+S LLE + L N + L+ N + +D+N FT+ + ++ K+ + ++
Sbjct: 483 IETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIVKNSASK-SHA 541
Query: 414 LDRVNENNARIMENIKILNRTLD 482
+++ N R M+++ I + L+
Sbjct: 542 AEKLRSNKKREMDDVAIEDEVLE 564
>AY566246-1|AAS59158.1| 754|Homo sapiens Nijmegen breakage syndrome
1 (nibrin) protein.
Length = 754
Score = 32.3 bits (70), Expect = 1.3
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 237 LESSAKLLEPDK-VNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDYINPLQYS 413
+E+S LLE + L N + L+ N + +D+N FT+ + ++ K+ + ++
Sbjct: 483 IETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIVKNSASK-SHA 541
Query: 414 LDRVNENNARIMENIKILNRTLD 482
+++ N R M+++ I + L+
Sbjct: 542 AEKLRSNKKREMDDVAIEDEVLE 564
>AK223256-1|BAD96976.1| 754|Homo sapiens nibrin variant protein.
Length = 754
Score = 32.3 bits (70), Expect = 1.3
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 237 LESSAKLLEPDK-VNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDYINPLQYS 413
+E+S LLE + L N + L+ N + +D+N FT+ + ++ K+ + ++
Sbjct: 483 IETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIVKNSASK-SHA 541
Query: 414 LDRVNENNARIMENIKILNRTLD 482
+++ N R M+++ I + L+
Sbjct: 542 AEKLRSNKKREMDDVAIEDEVLE 564
>AF069291-2|AAC62232.1| 754|Homo sapiens nibrin protein.
Length = 754
Score = 32.3 bits (70), Expect = 1.3
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 237 LESSAKLLEPDK-VNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDYINPLQYS 413
+E+S LLE + L N + L+ N + +D+N FT+ + ++ K+ + ++
Sbjct: 483 IETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIVKNSASK-SHA 541
Query: 414 LDRVNENNARIMENIKILNRTLD 482
+++ N R M+++ I + L+
Sbjct: 542 AEKLRSNKKREMDDVAIEDEVLE 564
>AF058696-1|AAC39752.1| 754|Homo sapiens cell cycle regulatory
protein p95 protein.
Length = 754
Score = 32.3 bits (70), Expect = 1.3
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 237 LESSAKLLEPDK-VNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDYINPLQYS 413
+E+S LLE + L N + L+ N + +D+N FT+ + ++ K+ + ++
Sbjct: 483 IETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIVKNSASK-SHA 541
Query: 414 LDRVNENNARIMENIKILNRTLD 482
+++ N R M+++ I + L+
Sbjct: 542 AEKLRSNKKREMDDVAIEDEVLE 564
>AF051334-1|AAC39732.1| 754|Homo sapiens nibrin protein.
Length = 754
Score = 32.3 bits (70), Expect = 1.3
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 237 LESSAKLLEPDK-VNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDYINPLQYS 413
+E+S LLE + L N + L+ N + +D+N FT+ + ++ K+ + ++
Sbjct: 483 IETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIVKNSASK-SHA 541
Query: 414 LDRVNENNARIMENIKILNRTLD 482
+++ N R M+++ I + L+
Sbjct: 542 AEKLRSNKKREMDDVAIEDEVLE 564
>AB013139-1|BAA28616.1| 754|Homo sapiens NBS1 protein.
Length = 754
Score = 32.3 bits (70), Expect = 1.3
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 237 LESSAKLLEPDK-VNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDYINPLQYS 413
+E+S LLE + L N + L+ N + +D+N FT+ + ++ K+ + ++
Sbjct: 483 IETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIVKNSASK-SHA 541
Query: 414 LDRVNENNARIMENIKILNRTLD 482
+++ N R M+++ I + L+
Sbjct: 542 AEKLRSNKKREMDDVAIEDEVLE 564
>AK123797-1|BAC85695.1| 174|Homo sapiens protein ( Homo sapiens
cDNA FLJ41803 fis, clone NHNPC2002749. ).
Length = 174
Score = 29.9 bits (64), Expect = 6.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 154 PSAHFPKCTFAECSSSS 104
PS HFP C+F EC+S S
Sbjct: 123 PSWHFPCCSFMECASGS 139
>AB052103-1|BAB39148.1| 622|Homo sapiens scavenger receptor with
C-type lectin type II protein.
Length = 622
Score = 29.9 bits (64), Expect = 6.7
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = +3
Query: 213 TFESDLLNLESSAKLLEPDKVNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDY 392
T++ L +ES K L + + TN++ ++ + + E TEK N KD
Sbjct: 78 TYDDKLTAVESDLKKLGDQTGKKAISTNSELSTFRSDILDLRQQLREITEKTSKN--KDT 135
Query: 393 INPLQYSLDRVNENNARIMENIK 461
+ LQ S D + + +++ E ++
Sbjct: 136 LEKLQASGDALVDRQSQLKETLE 158
>AB038518-1|BAB39147.1| 742|Homo sapiens scavenger receptor with
C-type lectin type I protein.
Length = 742
Score = 29.9 bits (64), Expect = 6.7
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = +3
Query: 213 TFESDLLNLESSAKLLEPDKVNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDY 392
T++ L +ES K L + + TN++ ++ + + E TEK N KD
Sbjct: 78 TYDDKLTAVESDLKKLGDQTGKKAISTNSELSTFRSDILDLRQQLREITEKTSKN--KDT 135
Query: 393 INPLQYSLDRVNENNARIMENIK 461
+ LQ S D + + +++ E ++
Sbjct: 136 LEKLQASGDALVDRQSQLKETLE 158
>AB034251-1|BAD83592.1| 742|Homo sapiens nurse cell scavenger
receptor 2 protein.
Length = 742
Score = 29.9 bits (64), Expect = 6.7
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = +3
Query: 213 TFESDLLNLESSAKLLEPDKVNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDY 392
T++ L +ES K L + + TN++ ++ + + E TEK N KD
Sbjct: 78 TYDDKLTAVESDLKKLGDQTGKKAISTNSELSTFRSDILDLRQQLREITEKTSKN--KDT 135
Query: 393 INPLQYSLDRVNENNARIMENIK 461
+ LQ S D + + +++ E ++
Sbjct: 136 LEKLQASGDALVDRQSQLKETLE 158
>AB005145-1|BAB72147.1| 742|Homo sapiens collectin placenta 1
protein.
Length = 742
Score = 29.9 bits (64), Expect = 6.7
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = +3
Query: 213 TFESDLLNLESSAKLLEPDKVNEYLDTNTDCRLNNNNRIIHQNDSNEFTEKHINNVPKDY 392
T++ L +ES K L + + TN++ ++ + + E TEK N KD
Sbjct: 78 TYDDKLTAVESDLKKLGDQTGKKAISTNSELSTFRSDILDLRQQLREITEKTSKN--KDT 135
Query: 393 INPLQYSLDRVNENNARIMENIK 461
+ LQ S D + + +++ E ++
Sbjct: 136 LEKLQASGDALVDRQSQLKETLE 158
>U19178-1|AAA64186.1| 277|Homo sapiens Hin-3 protein.
Length = 277
Score = 29.5 bits (63), Expect = 8.9
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 339 NDSNEFTEKHINNVPKDYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIY 518
N + EF+ + + +P D+ N Y L VNE+ E++ +L+ + + T++ ++ +Y
Sbjct: 26 NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPG---EDVALLSVSFEDTEATQVYPKLY 82
Query: 519 TRSLRHPYYRGSNYIH 566
GS+ +H
Sbjct: 83 LSPRIEHALGGSSALH 98
>L38616-1|AAA64231.1| 383|Homo sapiens brain and reproductive
organ-expressed protein protein.
Length = 383
Score = 29.5 bits (63), Expect = 8.9
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 339 NDSNEFTEKHINNVPKDYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIY 518
N + EF+ + + +P D+ N Y L VNE+ E++ +L+ + + T++ ++ +Y
Sbjct: 164 NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPG---EDVALLSVSFEDTEATQVYPKLY 220
Query: 519 TRSLRHPYYRGSNYIH 566
GS+ +H
Sbjct: 221 LSPRIEHALGGSSALH 236
>BC001251-1|AAH01251.1| 383|Homo sapiens brain and reproductive
organ-expressed (TNFRSF1A modulator) protein.
Length = 383
Score = 29.5 bits (63), Expect = 8.9
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 339 NDSNEFTEKHINNVPKDYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIY 518
N + EF+ + + +P D+ N Y L VNE+ E++ +L+ + + T++ ++ +Y
Sbjct: 164 NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPG---EDVALLSVSFEDTEATQVYPKLY 220
Query: 519 TRSLRHPYYRGSNYIH 566
GS+ +H
Sbjct: 221 LSPRIEHALGGSSALH 236
>AY438031-1|AAR30499.1| 383|Homo sapiens BRCA1/BRCA2-containing
complex subunit 45 protein.
Length = 383
Score = 29.5 bits (63), Expect = 8.9
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 339 NDSNEFTEKHINNVPKDYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIY 518
N + EF+ + + +P D+ N Y L VNE+ E++ +L+ + + T++ ++ +Y
Sbjct: 164 NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPG---EDVALLSVSFEDTEATQVYPKLY 220
Query: 519 TRSLRHPYYRGSNYIH 566
GS+ +H
Sbjct: 221 LSPRIEHALGGSSALH 236
>AK000097-1|BAA90943.1| 415|Homo sapiens protein ( Homo sapiens
cDNA FLJ20090 fis, clone COL04151. ).
Length = 415
Score = 29.5 bits (63), Expect = 8.9
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 339 NDSNEFTEKHINNVPKDYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIY 518
N + EF+ + + +P D+ N Y L VNE+ E++ +L+ + + T++ ++ +Y
Sbjct: 164 NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPG---EDVALLSVSFEDTEATQVYPKLY 220
Query: 519 TRSLRHPYYRGSNYIH 566
GS+ +H
Sbjct: 221 LSPRIEHALGGSSALH 236
>AF420605-1|AAL17818.1| 379|Homo sapiens BRE alpha a' isoform
protein.
Length = 379
Score = 29.5 bits (63), Expect = 8.9
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 339 NDSNEFTEKHINNVPKDYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIY 518
N + EF+ + + +P D+ N Y L VNE+ E++ +L+ + + T++ ++ +Y
Sbjct: 164 NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPG---EDVALLSVSFEDTEATQVYPKLY 220
Query: 519 TRSLRHPYYRGSNYIH 566
GS+ +H
Sbjct: 221 LSPRIEHALGGSSALH 236
>AF420603-2|AAL17816.1| 376|Homo sapiens BRE beta b isoform
protein.
Length = 376
Score = 29.5 bits (63), Expect = 8.9
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 339 NDSNEFTEKHINNVPKDYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIY 518
N + EF+ + + +P D+ N Y L VNE+ E++ +L+ + + T++ ++ +Y
Sbjct: 164 NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPG---EDVALLSVSFEDTEATQVYPKLY 220
Query: 519 TRSLRHPYYRGSNYIH 566
GS+ +H
Sbjct: 221 LSPRIEHALGGSSALH 236
>AF420602-1|AAL17814.1| 376|Homo sapiens BRE alpha b isoform
protein.
Length = 376
Score = 29.5 bits (63), Expect = 8.9
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 339 NDSNEFTEKHINNVPKDYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIY 518
N + EF+ + + +P D+ N Y L VNE+ E++ +L+ + + T++ ++ +Y
Sbjct: 164 NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPG---EDVALLSVSFEDTEATQVYPKLY 220
Query: 519 TRSLRHPYYRGSNYIH 566
GS+ +H
Sbjct: 221 LSPRIEHALGGSSALH 236
>AF015767-1|AAB69387.1| 383|Homo sapiens brain and reproductive
organ-expressed protein protein.
Length = 383
Score = 29.5 bits (63), Expect = 8.9
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 339 NDSNEFTEKHINNVPKDYINPLQYSLDRVNENNARIMENIKILNRTLDLTKSQEILDTIY 518
N + EF+ + + +P D+ N Y L VNE+ E++ +L+ + + T++ ++ +Y
Sbjct: 164 NWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPG---EDVALLSVSFEDTEATQVYPKLY 220
Query: 519 TRSLRHPYYRGSNYIH 566
GS+ +H
Sbjct: 221 LSPRIEHALGGSSALH 236
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,617,319
Number of Sequences: 237096
Number of extensions: 1449405
Number of successful extensions: 3152
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3152
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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