Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d20
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   6.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.7  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 309 LNNNNRIIHQNDSN-EFTEKHINNVPKDYIN 398
           ++NNN   + N +N  +   + NN  K Y N
Sbjct: 90  IHNNNNYNNNNYNNYNYNNNNYNNYKKLYYN 120


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/20 (30%), Positives = 9/20 (45%)
 Frame = +3

Query: 111 DEHSANVHFGKWADGTVDTN 170
           D H   ++FG W     + N
Sbjct: 179 DTHRCRINFGSWVHSGEEVN 198


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 132 AHLLNVRHRLLKFANFYSFSILRVFVLLTLYM 37
           AH+ + RHRL  F     F +  + +L+ + M
Sbjct: 168 AHVTHPRHRLCVFVAGVVFIVSGLLMLVGMVM 199


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 288 DTNTDCRLNNNNRIIHQNDSN 350
           + NT+   NNNN   + N++N
Sbjct: 232 NANTNASNNNNNNNNNNNNNN 252


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 514 YTRDL*DILTTVGQ 555
           YT+ + DILT +GQ
Sbjct: 32  YTKIMPDILTAIGQ 45


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 166 VSTVPSAHFPKCTFAECSSSSIKICKLLQFFDSSCFRIIN 47
           V+T   A FP+  F EC  S     +       + F +IN
Sbjct: 139 VTTKEKAKFPQEFFPECKWSRKGFLRTRWSISGTVFDLIN 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,275
Number of Sequences: 438
Number of extensions: 3135
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)