Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d19
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   3.2  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   7.5  
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|...    25   9.9  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   9.9  

>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 551 IKCHWPFYFKKKFCYDIMLIMVGSALLK 468
           I C+WP ++KK++      + +   L+K
Sbjct: 186 INCNWPIFYKKQYMESFEKLYIDKNLVK 213


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 224 EFADVVNRFASRRARDVLIQKY 289
           E A +VNRF  RR  D+L  KY
Sbjct: 497 ELAKIVNRFIIRRTNDIL-SKY 517


>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
 Frame = +2

Query: 590 NKYITWAYIRTFFNPN----SIPYHKI 658
           NKYI   +   FFNP+    SIPY K+
Sbjct: 164 NKYILADFCNPFFNPSTLSISIPYTKM 190


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 451 ELKFSPAKRI*PVN*NTKNICRFY*NSQDMY*YLYVVRSSVRC*III 311
           E+ F P  +   +N    N+  FY +S+ +  YL+++ +S R  +I+
Sbjct: 167 EINFVPLNQTQEIN--GSNLLEFYKDSKHLSRYLHIIANSPRYPVIL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,917
Number of Sequences: 5004
Number of extensions: 56937
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)