Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d17
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.7  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    27   3.0  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   4.0  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   5.3  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   5.3  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   5.3  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   5.3  

>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
 Frame = +3

Query: 354 QFIAKEAGALFDSSLLEDT-PSSSTNGT----ETLVPE--DNLYALMPPFETFLNVDKTA 512
           +F+  ++G++    + +D  P SS++      +T+ P   +N Y +  P + +    +  
Sbjct: 64  KFLQGKSGSVKVQEIPQDQLPKSSSDNAVTDRKTISPSGINNQYVIRNPKDVYYATVQAG 123

Query: 513 RLRHFFDNVKTGELI 557
           +L H FD VKT EL+
Sbjct: 124 KL-HLFDPVKTSELL 137


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 285 FAVYQSRHKHLTFQDRSKRLKLHQFIAKEAGALFDS-SLLEDTPS 416
           + +YQ  H HL +  +  R  +H+F+   A AL +S  LL D+ S
Sbjct: 321 YELYQ--HSHLGYGLKEARKLIHKFVLNNAEALKESLELLGDSTS 363


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +3

Query: 432 TETLVPEDNLYAL--MPPFETFL-NVDKTARLRHFFDNVKTGELIIGSC 569
           T   + +D+ YAL  + P  TFL ++++   +R +  + K G  +IGSC
Sbjct: 387 TSICLSKDSKYALTNLEPHTTFLWDLEENRIVRQYMGH-KLGNFLIGSC 434


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 390  SSLLEDTPSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLRHFF 530
            SSL   +PS ST G E  + +D  Y L+  +E    ++  A + H F
Sbjct: 1603 SSLRNVSPSESTGGYEGCIFDDQQYQLL--YELCERLEDHAAILHGF 1647


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 411 PSSSTNGTETLVP 449
           P+ STNGTET +P
Sbjct: 547 PNGSTNGTETFIP 559


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 114 NVTT*LRAGKKRI*MDPLLDASL 182
           NV T L   K+R+ +DPL+D SL
Sbjct: 271 NVVTCLDCKKERVAVDPLMDISL 293


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 228 WESERGEDDLAKIGVGALDFAVYQSRHKHLT 320
           W+SE  EDD+  +GV      ++    K +T
Sbjct: 63  WDSEENEDDITDVGVPGSHEIMFPGHSKIVT 93


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 186 PLRTHPIKDPFKFFFSQHEVMLLRFQKNSVNVIMIEKKPIQ*SSEMATNE 37
           P   HPI  P     SQH+    + +K +V  I+  K P   SS  A ++
Sbjct: 101 PRPMHPISHPL----SQHKTPEFKHRKRNVESILTPKNPSLFSSSNAASQ 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,092
Number of Sequences: 5004
Number of extensions: 54237
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)