Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d17
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)                     31   1.1  
SB_11569| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_12880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        27   9.8  
SB_33962| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)
          Length = 786

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 411 PSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGE 551
           P ++  GTET    DN         T L+ +K   + HF D V+  E
Sbjct: 585 PCTNNAGTETSASIDNYVTYCSDSSTALSAEKLRNIIHFLDEVEKAE 631



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 411 PSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGE 551
           P S+   TET    DN         T L+ +K   + HF D V+  E
Sbjct: 731 PCSNNASTETSASIDNYVTYCSDSSTALSAEKLRNIIHFLDEVEKAE 777


>SB_11569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 517 NLAVLSTFRNVSNGGINAYKLSSGTRVSVPLV 422
           N  V  +FR  S  G+ A+K+S+  RV + LV
Sbjct: 139 NFTVWLSFRTYSGDGVLAFKMSTDARVYLSLV 170


>SB_12880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 430 PLVDDEGVSSSKEESNKAPASLAMN*CNFNLLLRSWKVRCLCLDWY 293
           PL+D E  +  +E S     +L      F L L+SW     C DW+
Sbjct: 135 PLLDSEEYNKMEELSKDFEKNLGPK-LQFILQLKSWWATNYCTDWW 179


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = +3

Query: 165  LLDASLVAQSINYHGQQLQKTWESERGEDDLAKIGVGALDFAVYQSRHKHLTFQDRSKRL 344
            L D++  +QS+    QQLQ+   +   +  + +  + AL  A  +++ ++   QDR +++
Sbjct: 1664 LNDSNSTSQSLQERIQQLQRALTNSEHDRKIMQERLEALKNAQQEAKGRNNMLQDRMQQM 1723

Query: 345  KLHQ 356
            K  Q
Sbjct: 1724 KNEQ 1727


>SB_33962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 291 VYQSRHKHLTFQDRSKRLKLHQFIAKEAGALFDSSLLEDTPSSS 422
           VY   H H+  +D+++         KE+G   D  + EDT   S
Sbjct: 757 VYNHVHDHVFDEDKTRSTSSDSSAGKESGIGMDDDMKEDTGRGS 800


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,169,885
Number of Sequences: 59808
Number of extensions: 369818
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)