Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d17
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical pr...    29   3.7  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    28   6.5  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    28   6.5  
U41007-19|AAA82274.1|  432|Caenorhabditis elegans Hypothetical p...    27   8.6  

>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 592 SLTQFC*LQLPMISSPVFTLSKKCLNLAVLSTFRNVSNGGINAYKLSSGTRVSVP 428
           S+ Q C LQ   I SPV+  +++  + +  S F + S+   + ++ S   + S P
Sbjct: 154 SMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSSSSAFHPFRPSESAQQSFP 208


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical
           protein M18.5 protein.
          Length = 1134

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
 Frame = +3

Query: 237 ERGEDDLAKIGVGALDFAVYQSRH-KHLTFQDRSKRLKLHQFIAKEAGALFDSSLLEDTP 413
           + GEDD+ ++        +Y   H KHL F D +   K  +  +++A    DSS+L   P
Sbjct: 165 DTGEDDVYRVAF------IYDDDHGKHLQFSDLNMHDKEFRTYSRQASIAADSSVLIPVP 218

Query: 414 SSSTN----GTETLV--PEDNLYALMP 476
            +       G+ +++  P DNL  ++P
Sbjct: 219 HAIGGVIVLGSNSVLYKPNDNLGEVVP 245


>Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical
           protein F15D3.7 protein.
          Length = 242

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 234 SERGEDDLAKIGVGALDFAVYQSRH 308
           S R ED+L   G GAL  A+Y+S H
Sbjct: 181 SVRAEDELNGFGAGALTGAIYRSPH 205


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -3

Query: 568 QLPMISSPVFTLSKKCLNLAVLSTFRNVSNGGINAYKLSSGTRVSVPLVDDEGVSSSKEE 389
           +L   SSP   + +  L+ A+ ++ R V +G  N  +    T  S+P+ D   +SSS E 
Sbjct: 46  ELSSASSPSINVPRFSLSNALPNSARTVDSGISNEDETRPPTTASLPM-DQPSLSSSPEN 104

Query: 388 -SNKAPA 371
             N AP+
Sbjct: 105 RLNPAPS 111


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -3

Query: 568 QLPMISSPVFTLSKKCLNLAVLSTFRNVSNGGINAYKLSSGTRVSVPLVDDEGVSSSKEE 389
           +L   SSP   + +  L+ A+ ++ R V +G  N  +    T  S+P+ D   +SSS E 
Sbjct: 46  ELSSASSPSINVPRFSLSNALPNSARTVDSGISNEDETRPPTTASLPM-DQPSLSSSPEN 104

Query: 388 -SNKAPA 371
             N AP+
Sbjct: 105 RLNPAPS 111


>U41007-19|AAA82274.1|  432|Caenorhabditis elegans Hypothetical
           protein C33H5.17 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +3

Query: 387 DSSLLEDTPSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLRHFFDN 536
           DS+ ++DT + S  G+  +VP D+  +L       + ++ + R+R  F +
Sbjct: 66  DSAEIDDTSTDSLLGSRCMVPYDSDRSLSLHTAIIMEIESSKRVRVLFSH 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,571,479
Number of Sequences: 27780
Number of extensions: 293241
Number of successful extensions: 780
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)