Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d16
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    27   3.0  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   5.2  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   5.2  
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    26   5.2  

>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 606 VERTIGRHTAPPEGLEQKYLTIKGCRALMRHAPNTSKLAVFFVV 475
           ++RT+G      + +EQ+YLT+K     + +  N S     F+V
Sbjct: 290 IQRTLGPRYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIV 333


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 155 KHYLLYFNSNITLFISDKYIFNVLVDIN 72
           KHY  +FN +    +S KY+F VL  ++
Sbjct: 301 KHYA-FFNMSYKAKLSTKYVFRVLAQLS 327


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 524 RALQPFMVKYFCSNPSGGAVCLPMVLSTFSHYSPL 628
           R L   +   FC +P    VC+P+ +     ++PL
Sbjct: 338 RHLNHLLKSPFCVHPGTSRVCVPIDIERMDSFNPL 372


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 309 DFPKGQVSELAANLFLNC 256
           D  KG+VS L  NL +NC
Sbjct: 79  DLKKGEVSRLGTNLEINC 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,154
Number of Sequences: 5004
Number of extensions: 50109
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)